PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G22460.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LSD | ||||||||
Protein Properties | Length: 189aa MW: 20289.2 Da PI: 8.4106 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.3 | 1.2e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L+YP GApsV+CalC+++ LPERR03G22460.2 7 CHGCRSVLRYPSGAPSVCCALCQAI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 48.9 | 1.1e-15 | 93 | 116 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ LPERR03G22460.2 93 CGQCRTTLMYPYGAPSVKCAICHY 116 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.3E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.1E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.4E-12 | 90 | 118 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-14 | 93 | 117 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MQSQIVCHGC RSVLRYPSGA PSVCCALCQA ITTVPPPAPE KSPLIFNSIS SNPDSSHIFY 60 SIGNGSSNMW WLPNIADVYS QCRHLNNIAH VSCGQCRTTL MYPYGAPSVK CAICHYITNT 120 GMNTMAPTPS PMPTSSGSSY NAPSTSVPTS RSQNVTVVVE NPMTVDEKGK LVSPPKTRLY 180 TTNISSLLN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G22460.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111569 | 4e-72 | AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence. | |||
GenBank | CT830679 | 4e-72 | CT830679.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116O15, full insert sequence. | |||
GenBank | KP940472 | 4e-72 | KP940472.1 Oryza sativa cultivar Zixuan1 C2C2-zinc finger LSD1-like transcription factor (LSD3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650331.1 | 1e-77 | PREDICTED: protein LOL3 | ||||
Refseq | XP_015690721.1 | 1e-77 | PREDICTED: protein LOL3 | ||||
Swissprot | Q6ASS2 | 1e-76 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A0D9VWQ2 | 1e-134 | A0A0D9VWQ2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G22460.1 | 2e-92 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 6e-28 | lsd one like 1 |
Publications ? help Back to Top | |||
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