PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G22460.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LSD
Protein Properties Length: 246aa    MW: 25967 Da    PI: 8.5863
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G22460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.81.7e-137195125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr +L+YP GApsV+CalC+++
  LPERR03G22460.1 71 CHGCRSVLRYPSGAPSVCCALCQAI 95
                     ***********************97 PP
2zf-LSD139.11.2e-12112136125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      CggCrtlL+Y+r+A  VRC++C tV
  LPERR03G22460.1 112 CGGCRTLLMYTRNADTVRCSCCSTV 136
                      ***********************99 PP
3zf-LSD148.41.6e-15150173124
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                      Cg+Crt+L+YP+GApsV+Ca+C+ 
  LPERR03G22460.1 150 CGQCRTTLMYPYGAPSVKCAICHY 173
                      **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.9E-126898IPR005735Zinc finger, LSD1-type
PfamPF069438.9E-107195IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.0E-14109139IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-10112136IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.9E-12147175IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-14150174IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTPSPPKHPP LDSSTRILLA AAAAPSPATS AAAKVFAEPR FPCAGRETYE SEVYGSRLLL  60
ASPGMQSQIV CHGCRSVLRY PSGAPSVCCA LCQAITTVPP PAPVLEMAHL ICGGCRTLLM  120
YTRNADTVRC SCCSTVNLVR PVNNIAHVSC GQCRTTLMYP YGAPSVKCAI CHYITNTGMN  180
TMAPTPSPMP TSSGSSYNAP STSVPTSRSQ NVTVVVENPM TVDEKGKLVS PPKTRLYTTN  240
ISSLLN
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G22460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115690.0AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence.
GenBankCT8306790.0CT830679.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116O15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650331.11e-111PREDICTED: protein LOL3
RefseqXP_015690721.11e-111PREDICTED: protein LOL3
SwissprotQ6ASS21e-110LOL3_ORYSJ; Protein LOL3
TrEMBLA0A0D9VWQ11e-176A0A0D9VWQ1_9ORYZ; Uncharacterized protein
STRINGLPERR03G22460.11e-176(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.67e-50LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]