PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G22450.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 479aa    MW: 50943.5 Da    PI: 8.4877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G22450.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.86.9e-17293339455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  LPERR03G22450.4 293 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 339
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-21286351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-17292343No hitNo description
PfamPF000103.4E-14293339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-21293347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-18295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MNQFVPDWSN MGDASRTLGD DDSLIELLWC NGHVVMQSQN HRKLPPRPPE KTPPPPPEDD  60
AGLWFPFAFA DSLEKDIFSD LFYEGPVAAP AATPATGDGK PMAAGDEDDD DKRGLMPPPK  120
STHASCSRQQ QQQTMSLVAD AGGGLSGLVR KRNSALGGGG GGASSSMVSA IGSSICGSNQ  180
VQAQVHHHPS AVGSANAVPT VASSSGRSSC RFGVTATAME TTTTEPASGS NRSSRSKRKR  240
VLLLDTTTED YSESLSDDGG ESESVAAAAA GLLARKPPPK LTTAGRRSRA AEVHNLSERR  300
RRDRINEKMR ALQELIPHCN KTDKASMLDE AIEYLKSLQL QVQMMWMGSG MAPPVMFPGV  360
HQYLPRMGVG IGAAMPRMPF MAAPQTVVPT PPVNPIQLCA PPPPPPQGTS RRRTAANTCQ  420
RRRTHAHYLG VNHLQPPPSQ GVGYYPLGAK ALQQNPAAIH VPTAPAMLPE NEPNRGSAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297302ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G22450.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605051e-112AK060505.1 Oryza sativa Japonica Group cDNA clone:001-018-H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794698.11e-160transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLA0A0D9VWP80.0A0A0D9VWP8_9ORYZ; Uncharacterized protein
STRINGLPERR03G22450.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-34phytochrome interacting factor 3-like 5