PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G21860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 215aa MW: 22821.8 Da PI: 10.777 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.2 | 1.8e-28 | 108 | 157 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ LPERR03G21860.1 108 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 157 9************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.3E-14 | 105 | 159 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 105 | 158 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-21 | 108 | 157 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-6 | 109 | 157 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MATTATAPDL SLHISPPSAA DMAGRSGGGG EMEQLAEPKL CLGFDMVATQ HNGGCSLQQQ 60 QQRLHQPSQI QRFKKSAIGS PVLSGGGGNG GAARSGNGGG GKRSSRAPRM RWTTALHAHF 120 VQAVELLGGH ERATPKSVLE LMNVKDLTLA HVKSHLQASH GYMRDMGFLR TGGGEMDGFD 180 VLGNTSSIAI TNIRSSHQER AIRNKERRIV GLNHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-14 | 109 | 157 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-14 | 109 | 157 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-14 | 109 | 157 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-14 | 109 | 157 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G21860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690532.1 | 5e-73 | PREDICTED: two-component response regulator ARR1-like | ||||
Swissprot | Q9FJV5 | 4e-31 | KAN4_ARATH; Probable transcription factor KAN4 | ||||
TrEMBL | A0A0D9VWH4 | 1e-156 | A0A0D9VWH4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G21860.1 | 1e-156 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3742 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 1e-27 | G2-like family protein |
Publications ? help Back to Top | |||
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