PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21740.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YC
Protein Properties Length: 334aa    MW: 36861.2 Da    PI: 4.5025
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC72.27.7e-2331131299
            NF-YC   2 lksfwekqiekatdfk.nhe..lPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      ++ fw++  e+  + + nhe  lP+  +k+i+ a+e+  m+s ++P++++k celf+ el lr+w+ a++++r t+   dia+a++ t+ f fl
  LPERR03G21740.1  31 MEEFWKRSQEEIDESRgNHEliLPVESVKNIIHAEEEGMMLSDDTPTFVTKLCELFVQELILRAWVCANSQNRDTILDIDIAQAIATTKSFHFL 124
                      789***998888877767774469********************************************************************** PP

            NF-YC  93 vdivprd 99 
                       ++v  +
  LPERR03G21740.1 125 SNVVSSH 131
                      *999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001257.1E-97115IPR007125Histone H2A/H2B/H3
SuperFamilySSF471133.86E-1549139IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.1E-1953128IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MTIPRKEGVE HNEEDDTLSK LQLIAQQRHA MEEFWKRSQE EIDESRGNHE LILPVESVKN  60
IIHAEEEGMM LSDDTPTFVT KLCELFVQEL ILRAWVCANS QNRDTILDID IAQAIATTKS  120
FHFLSNVVSS HRAQGGTIPD TDVSIWKSQK LDQTDTICHP LQAKQVSHLP GYPPHIPACP  180
PSGQIGTLNT PCPFEFAMQA ESLLSGNKEK SPLNEVLVLS NKVSMNNSNA ATTGCGDSSS  240
DVAIVAQEQG EYAHPSSVQY PCPSLEHNIG GLTPVGHGHS ISASIDANIK KQQQEEQNID  300
LQDAFLGEEI MYNESLEGSQ MDVDLVFPNK VRPQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639189.11e-133uncharacterized protein LOC4338359
TrEMBLA0A0D9VWF70.0A0A0D9VWF7_9ORYZ; Uncharacterized protein
STRINGLPERR03G21740.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.26e-17nuclear factor Y, subunit C2