PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 261aa    MW: 26628.2 Da    PI: 9.6212
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof111.93e-3550103659
           zf-Dof   6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 
                       +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ 
  LPERR03G21700.1  50 EQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRP 103
                      68*************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027017.6E-3150102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.55950104IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-235197IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAAGGGALLL PPPPPPHHSF KHDVTDMQMQ AATGSCLQPP ASSGGGGGRE QCPRCASHDT  60
KFCYYNNYNT SQPRHFCRAC RRYWTLGGSL RNVPIGGSTR KRPRPPLRRP PVHFAATVGA  120
REYPQAAPAP APSVATASQQ QAGLLGSLFA LGAAPLLEGA RVGFDLGLGL PGPGGANAVA  180
DVAAAGFHGL GGQSRGGGIL PTTMTTSSAM LWPTGLLDGT TTTNNVETWK LAAGGGAAMW  240
PEFSAAAAQQ GGLMHGGAQL L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100104KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126112e-81CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153027.12e-72dof zinc finger protein DOF3.1-like
RefseqXP_020171952.12e-72dof zinc finger protein DOF3.1-like
TrEMBLA0A0D9VWF10.0A0A0D9VWF1_9ORYZ; Uncharacterized protein
STRINGLPERR03G21700.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-25DOF zinc finger protein 1