PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G21390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 418aa MW: 48039.1 Da PI: 8.5269 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.6 | 6.9e-11 | 34 | 96 | 11 | 78 |
HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 ++r+++p +f + +g+ +kt++le+ +g +++v++ +kk +r+vl++GW+ Fv+a+gLk g+ LPERR03G21390.1 34 DFHNRMIIPENFE--YyfKGV--ITKTIKLETCNG-TFDVQI--TKKLNRMVLGSGWEPFVSAHGLKMGE 96 34678*******4..436777..6779**999665.89****..***********************998 PP | |||||||
2 | B3 | 32.2 | 1.9e-10 | 160 | 227 | 31 | 96 |
.--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 31 eesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 +es+ +t++ ++++W ++ y++k+g+ +l++ W+ Fv++n+++e D++vF +++ +f+++v++ LPERR03G21390.1 160 HESRNVTVQRpCKSKKWHPTF-YKRKDGSiNILRGYWSYFVQDNRVQEHDICVFVPTKHaGNFTFTVHL 227 45667888885577*******.666666669************************88777999888887 PP | |||||||
3 | B3 | 37.3 | 4.9e-12 | 348 | 410 | 35 | 96 |
EEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 35 tltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +l + g+ W + + +++s r +l +GW++Fv++n+L+ gD+++++l+ +++++l++ v LPERR03G21390.1 348 QTVLLERLGKIWATMMHVkNGRSMRRFLINGWNRFVRENRLRIGDICLLELKTHETKKLTIAV 410 356677789***999977466666677788********************9977777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-12 | 20 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-10 | 21 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.514 | 24 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.14E-15 | 25 | 96 | No hit | No description |
Pfam | PF02362 | 3.6E-9 | 27 | 96 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.2 | 27 | 116 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-12 | 151 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.17E-10 | 152 | 226 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-11 | 152 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.1E-8 | 160 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.361 | 161 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.061 | 298 | 416 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-14 | 305 | 408 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-13 | 306 | 405 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.16E-10 | 311 | 398 | No hit | No description |
Pfam | PF02362 | 2.7E-10 | 348 | 410 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.87 | 350 | 414 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MRKPNTRSTE RVEYYLCNRM DNQEKHFFKV MIGDFHNRMI IPENFEYYFK GVITKTIKLE 60 TCNGTFDVQI TKKLNRMVLG SGWEPFVSAH GLKMGEYSPS EHESVESADL QTSQEPYILL 120 HFSYLSDVQK ERVDALIQKI QPKITVFVAI MRYAALHFPH ESRNVTVQRP CKSKKWHPTF 180 YKRKDGSINI LRGYWSYFVQ DNRVQEHDIC VFVPTKHAGN FTFTVHLLCT SATCSMGGTC 240 VDRIGSSVGT THAVNSSIVM EEPIEADDVS LENCRNGVSD ESEDSEDSEG PADPPYIIVK 300 EKVRSIQSKV PLYVALMKKT NIELTGCHCQ LEFGACYSAT VHLPDRRQTV LLERLGKIWA 360 TMMHVKNGRS MRRFLINGWN RFVRENRLRI GDICLLELKT HETKKLTIAV HAISSNQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G21390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633049.1 | 1e-132 | B3 domain-containing protein Os03g0619600 | ||||
Refseq | XP_015633050.1 | 1e-132 | B3 domain-containing protein Os03g0619600 | ||||
Swissprot | Q6AV22 | 1e-133 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | A0A0D9VWB4 | 0.0 | A0A0D9VWB4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G21390.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Publications ? help Back to Top | |||
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