PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G20320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 330aa    MW: 33056.7 Da    PI: 8.3272
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G20320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.1e-392282262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+
  LPERR03G20320.1 22 QEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 82
                     57889*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027016.6E-332480IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-252575IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6092680IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102864IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAPAAGDEGR KGAAPDGTPP PQEQGLRCPR CDSPNTKFCY YNNYSLSQPR HFCKTCRRYW  60
TKGGALRNVP VGGGCRKNKR SRSAAAASRL SLNLQSVVDA ADPAARLGFH TPPLGGAAAD  120
FQQQGGGGGG GGVGVGMLPM PRLQHSPGGG VGQYVAFGEW PTAGDIGGGG GNAVSSTIAS  180
SIESLSFINQ DLHWKLQQQR LATMFLGPPA SANDTGGGGG QAPPHAAAVG GGGAGFQLHM  240
AGVPISSGSC IEAAAAVPPS VTSWFMDTTC SSYGLPSPPP PSAAGAVATN NTSSINNGGR  300
SSGDDNNAAA SNCGSAISAW GDISTFAMLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G20320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330032e-87AC133003.3 Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence.
GenBankAP0149592e-87AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-87CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630014.11e-95dof zinc finger protein DOF5.7
TrEMBLA0A0D9VVX80.0A0A0D9VVX8_9ORYZ; Uncharacterized protein
STRINGLPERR03G20320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-32DOF zinc finger protein 1