PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G20110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 464aa MW: 49207.6 Da PI: 5.9864 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.6e-16 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed lv+ v+q+G g+W+++ r+ + R++k+c++rw ++l LPERR03G20110.1 23 KGPWTTAEDAELVQHVRQHGEGNWNSVQRMTSLLRCGKSCRLRWTNHL 70 79******************************99***********996 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.2e-16 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++ LPERR03G20110.1 76 KGSFSPDEELLIAQLHAQLGNK-WARMASHLP-GRTDNEIKNYWNT 119 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.435 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.25E-28 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.61E-11 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 23.304 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-24 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.26E-11 | 78 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MKRAPEEKGE EMGEEEEEVA LKKGPWTTAE DAELVQHVRQ HGEGNWNSVQ RMTSLLRCGK 60 SCRLRWTNHL RPNLKKGSFS PDEELLIAQL HAQLGNKWAR MASHLPGRTD NEIKNYWNTR 120 AKRRQRAGLP IYPPEVQLNH HHLNLNFANA NAKRRRYDDF FSSSSLSPPQ SASASNVLLS 180 PDDAAAAAGY TSARPAPLDL AGQLAMGGNT SGGALQFLAA TPFSAPSSPW AKPFARNAHF 240 FRFPHSSPVS PTTPPTPTTG LSLGGYGLGL YHAGDRTARL FPPVSQSLGA RVELPSTQFR 300 PAMTPAAATG GLAGGGGGAL MQDHPNAASF EAMMQELHDV IKTESPVPAA NGGGETGGVI 360 SGDSKLEVEL KDDIETLFDI IIPATFATAA PESLTATTAA SAPNNSGSVS QHSSDDQDHS 420 NGADVTIDLP VLTGGGGDGD GSSEQEWCID GATCQWNNMS GGIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-29 | 21 | 124 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G20110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042537 | 1e-102 | BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds. | |||
GenBank | KJ727532 | 1e-102 | KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629365.1 | 1e-180 | transcription factor MYB65 | ||||
TrEMBL | A0A0D9VVV5 | 0.0 | A0A0D9VVV5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G20110.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7420 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 1e-64 | myb domain protein 101 |