PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G19480.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 541aa    MW: 59858.4 Da    PI: 6.7873
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G19480.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.6e-06173196327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C++f++ G+Ck G +C+++H +
  LPERR03G19480.2 173 RRPCHYFSK-GICKNGHKCQYSHHQ 196
                      89*******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.014170197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5173195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5164411.433214297IPR025605OST-HTH/LOTUS domain
PfamPF128721.2E-16214292IPR025605OST-HTH/LOTUS domain
PROSITE profilePS501028.655311386IPR000504RNA recognition motif domain
SuperFamilySSF549281.96E-8334412IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3303.7E-6334388IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MEVPELAKLA FSRVQRVEPE NVGKILGVML LREPDEDEMV QLAYGTDAAL LARIDDAKAA  60
LAVIYARCSG HGPGGGGPPV PAGARHYSPA AAATFGFHVQ SQYWPDSPPA TMAHQELLTA  120
AEGPYSLRSH HHVLDDNMGG YYYPAGEDTF LNGSAGGGSP PARARRSNGL SSRRPCHYFS  180
KGICKNGHKC QYSHHQVYQD TLGDVYQPGA TPGSLETLEI EITDLLNSRR GQPVSIASLP  240
TLYGEKYGKG LQADGYLTES QRHGKAGYSL TRLLSRLNKI RVIERPHGQH SVVLAEDAAK  300
YMDFRGGCDT GSVPASSHQI YLTFPAESTF TEDNYGPVRD VRIPCQERRM FGFVSFQSPE  360
TVSTILMRRN PHFICGSRVL VKPYREKSKC IDRTCVDNIK PIVPYCPPRF FEFDQEHYTE  420
YDASRLMRKH LAEKRESLLE IERRCSTVRR LEALQPQFSY FDCSIEDFSP LHSPGRDSKQ  480
LDLMNPPIAS PDTLEIVSTS QAPLTHAGNI YDDHESNQIE LLPKSPFGAS VPDGNSISAV  540
I
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G19480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118050.0AK111805.1 Oryza sativa Japonica Group cDNA clone:J013094C18, full insert sequence.
GenBankAK1119020.0AK111902.1 Oryza sativa Japonica Group cDNA clone:J023082B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648183.10.0zinc finger CCCH domain-containing protein 54 isoform X2
RefseqXP_015648185.10.0zinc finger CCCH domain-containing protein 54 isoform X3
RefseqXP_015648186.10.0zinc finger CCCH domain-containing protein 54 isoform X3
SwissprotQ6ZK570.0C3H54_ORYSJ; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A0D9VVN30.0A0A0D9VVN3_9ORYZ; Uncharacterized protein
STRINGLPERR03G19480.20.0(Leersia perrieri)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]