PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G18050.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 344aa    MW: 37824.9 Da    PI: 4.6512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G18050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.1e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Edell+ ++++ G g W + +++ g++R++k+c++rw++yl
  LPERR03G18050.1 15 RGAWTAAEDELLASYIAKNGEGKWGSLPKRAGLKRCGKSCRLRWLNYL 62
                     89********************************************97 PP
2Myb_DNA-binding30.67.9e-1068118147
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg..kgRtlkqcksrwqky 47 
                      rg+ +++E++l+++++++lG++   +  I +  g   gRt++++k++w++ 
  LPERR03G18050.1  68 RGNISADEEDLILRLHTLLGNRqlKFVDIYADAGrlPGRTDNEIKNYWNST 118
                      7899******************886666666666888***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.6661066IPR017930Myb domain
SuperFamilySSF466893.35E-2213115IPR009057Homeodomain-like
SMARTSM007173.1E-121464IPR001005SANT/Myb domain
PfamPF002491.1E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-211669IPR009057Homeodomain-like
CDDcd001671.61E-91762No hitNo description
PROSITE profilePS5129410.367123IPR017930Myb domain
SMARTSM007171.3E-567121IPR001005SANT/Myb domain
PfamPF002494.6E-768118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-1670123IPR009057Homeodomain-like
CDDcd001677.96E-672119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRKPCCSKE DSLNRGAWTA AEDELLASYI AKNGEGKWGS LPKRAGLKRC GKSCRLRWLN  60
YLRPGIKRGN ISADEEDLIL RLHTLLGNRQ LKFVDIYADA GRLPGRTDNE IKNYWNSTLS  120
KRLLTNNNSS SASPAATSSD AAAAARRRRS PEPNTVIVSP RPIRTKAIRW CSSGNRAVQQ  180
QQQAGSSDHN GRPLGEEEQA APPQQREYDC DEMPPAVCVD DLGLDDMIDL GLDGFLISPW  240
RGGGYDYELG GCGGEDGAAD LDALLGEDDG EQQQEEGDVA SLLGDDYDYL ELSPCVFRRS  300
SQHEEDHIIG LVAEELLTQS DDHFLNLIVQ IGMEQNGTNL NKPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-201312325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G18050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankD886191e-85D88619.1 Oryza sativa mRNA for OSMYB3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629423.18e-87anthocyanin regulatory C1 protein
TrEMBLA0A0D9VV610.0A0A0D9VV61_9ORYZ; Uncharacterized protein
STRINGLPERR03G18050.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-50myb domain protein 5