PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G17060.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CAMTA
Protein Properties Length: 1027aa    MW: 115173 Da    PI: 6.4371
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G17060.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.51.7e-55211372118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ +krwl+++ei++iL n+++++l+ e+++rp sgsl+L++rk +ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fq
  LPERR03G17060.2  21 LEAHKRWLRPTEICEILSNYRSFSLSPEPPNRPGSGSLFLFDRKTLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQ 114
                      55699***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee++++ivlvhylevk
  LPERR03G17060.2 115 RRTYWLLEENFTHIVLVHYLEVK 137
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.12116142IPR005559CG-1 DNA-binding domain
SMARTSM010769.8E-7519137IPR005559CG-1 DNA-binding domain
PfamPF038594.2E-4922136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.8E-7447533IPR013783Immunoglobulin-like fold
SuperFamilySSF812968.6E-17448532IPR014756Immunoglobulin E-set
PfamPF018331.7E-6448531IPR002909IPT domain
SuperFamilySSF484032.18E-17622737IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-18637738IPR020683Ankyrin repeat-containing domain
CDDcd002042.72E-14637735No hitNo description
PROSITE profilePS500888.763643675IPR002110Ankyrin repeat
PROSITE profilePS5029718.059643737IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-8648738IPR020683Ankyrin repeat-containing domain
SMARTSM002480.31676705IPR002110Ankyrin repeat
SMARTSM00248440715744IPR002110Ankyrin repeat
SuperFamilySSF525401.57E-8844901IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045850872IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.773851880IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055852871IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0041873895IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.523875898IPR000048IQ motif, EF-hand binding site
PfamPF006123.1E-4876895IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1027 aa     Download sequence    Send to blast
MAETRKFVMP NQPPDISQMM LEAHKRWLRP TEICEILSNY RSFSLSPEPP NRPGSGSLFL  60
FDRKTLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEENFTHIVL VHYLEVKGAK QNYGRAKEEI MQLSGADSPS CSNSITSQNQ MAPPIMDAAE  180
SPISGQISEY EGAEPAKFGA ADNFRASSRY HPLIEMQQPM DGIVMDSMLY PSASTICNQG  240
YHGDMLPGTS NLNSHLFTHN DIARMFDDSS TGLRDISRTL FDSVPCDEPF SGYPNGFMEP  300
TLHSSFSMIE ANNLEDSSLL ETFTSEALYT NNLSQKEADA LSFAGISSSE VNGNKCTEGS  360
TKHPLLKQLS LDLFKIESSG LKKHDSFSRW MSRELGEVVD LDIKSSSDAF WSSTEIVNAA  420
DGPSVPANGH LDAYVVSPSL SKDQLFSILD ISPSCSYIGS KTKVLVTGTF LAENVENCKW  480
SCMFGDVEVP AEVLADGALR CFAPERQSGR VPFYVTCSNR IACSEVREFE YRDSDAQYLE  540
TSYSQTHGIN EMHLQIRLEK LLSLGPDDNH LLVCGHEKLE LIEAINSLML DEKWSDQLSP  600
SISKDVTTPR NQSLKKLVKE KLHCWLICKI KDCEKGPNVL GKEGQGVIHL AAALGYDWAI  660
RPILVAGVNV NFRDAHGWTA LHWAAFCGRE RTVSILIANE AAAGALTDPT SEFPSGRTPA  720
DLASTNGHKG IAGFLAEAAL TSHLSALTIK DSKDSNVGES CGLTIAEYHP ETNSAQLPVE  780
DSCVDPLKDS LTAVRKSTQA AARIFQAFRV ESFHRKKIVE YGYDDCGLSD EHTLSLISLK  840
NVKQGHYDTH LHSAAVRIQN KFRGWKGRKE FMIVRQRIVK IQAHVRGHQV RKSYKKVVWS  900
VGIVEKVILR WRRKRPGLRN FRTEKQIECQ SQIQPAKTED EYDFLQDGRR QAEARLQRAL  960
DRVRSMTQYP EARDQYQRLT TCVAEMQQSK VMQDEMLSEA AGADVNDFMI GLEDLICRDD  1020
AQMSAIW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G17060.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631089.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A0D9VUR60.0A0A0D9VUR6_9ORYZ; Uncharacterized protein
STRINGLPERR03G17060.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1