PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G16670.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 260aa    MW: 28813.4 Da    PI: 6.1704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G16670.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.94.9e-053684254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +  ++erE+  R ++N+ f eL ++l  +     + + Ka iL+ +++ +++L
  LPERR03G16670.2 36 KIHKSEREKLKRGHLNDLFGELDKMLEAD----RQSNGKACILTDTTRILRHL 84
                     67789*********************997....68899999***999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.1E-932104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1032103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.9473484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAEGGSVATA VRPAVADKLV HGPISDKKCR KKVPRKIHKS EREKLKRGHL NDLFGELDKM  60
LEADRQSNGK ACILTDTTRI LRHLLSEVQS LRQENNTLQN ESNYVTMERN ELQDENGVLR  120
SEISELQSEL SMRAPGNPLW SHGTTGSPVP VPHSPSSVFP SQQPFQPSAM ASTDCTVFPL  180
QQPTVIEHSY AKQPLELKLF LEAPLVEDQE PSEDQEAPNN VARPQARYPT QASSWPISLG  240
LPRLEDEQCS SSTTSSSKIV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G16670.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633301.11e-145transcription factor BHLH062-like
RefseqXP_015633302.11e-145transcription factor BHLH062-like
SwissprotQ69V106e-79BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A0D9VUK90.0A0A0D9VUK9_9ORYZ; Uncharacterized protein
STRINGLPERR03G16670.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.37e-33bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]