PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G16120.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 480aa    MW: 53718.3 Da    PI: 9.0713
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G16120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.74.2e-27191591127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                      lp+Gf+F+Ptd+elvv++L++k++g++      ++l+e     + +++ +  +P  L +k+++ +e +w+fF kr+kky+ g+++ r+t +g+W
  LPERR03G16120.1  19 LPAGFHFKPTDDELVVHFLRRKIAGQQmllpifIDLFEdrlsNVVDAKQLCPDPAPLVEKYEEyGEVRWFFFNKREKKYNIGTQPIRTTPNGTW 112
                      799************************8877763333233223444444445777786555552556*************************** PP

              NAM  84 katgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyr 127
                      katg+ +++ +      +ge+vg  +tLv+y + +   + t+W+  ey+
  LPERR03G16120.1 113 KATGSFRSIRTGagddgEGEVVGRVRTLVYYANGDD--QPTEWTKYEYE 159
                      **********98888888888**********55444..57***999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-3115186IPR003441NAC domain
PROSITE profilePS5100533.06419186IPR003441NAC domain
PfamPF023651.5E-1720159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MEGSSSFKPT VKKKFVLNLP AGFHFKPTDD ELVVHFLRRK IAGQQMLLPI FIDLFEDRLS  60
NVVDAKQLCP DPAPLVEKYE EYGEVRWFFF NKREKKYNIG TQPIRTTPNG TWKATGSFRS  120
IRTGAGDDGE GEVVGRVRTL VYYANGDDQP TEWTKYEYEN VASLEEAQAK TTNKLDEWVL  180
WTIQKKQNCG KNGVRKGKKG MKRKEPSPDS GNNGGNSSAD EEQDDRSATT GDKEGRKQRK  240
GRKKGKKANV VEETPNAKQI NADIFLVKRS PAPLPPPLPE PSQSLPQVNN SINIFQDLQP  300
LAEHVPHLHS EMMGMNNFSL DPNQSIQQHQ QAIVSTMPMD PTASNSTAFS QSQLIVTSQP  360
QGVLELTRTM PFLSPTLSPS AMTMAWAQTL SVSHESSSSH YGANMMMSQN SIVNRTFPNF  420
FRYDYTYEAA DPIGHSYHHA AVAMQNNPMG RNSYANFGHG NGFFGDVQFN VAAPSPRRMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-221718815167NO APICAL MERISTEM PROTEIN
1ut4_B2e-221718815167NO APICAL MERISTEM PROTEIN
1ut7_A2e-221718815167NO APICAL MERISTEM PROTEIN
1ut7_B2e-221718815167NO APICAL MERISTEM PROTEIN
4dul_A2e-221718815167NAC domain-containing protein 19
4dul_B2e-221718815167NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238246RKGRKKGKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G16120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9VUD40.0A0A0D9VUD4_9ORYZ; Uncharacterized protein
STRINGLPERR03G16120.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158671313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-22NAC family protein