PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G14050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 449aa MW: 49138.5 Da PI: 6.3477 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.2 | 2.2e-34 | 216 | 270 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+av++LGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ LPERR03G14050.1 216 KQRMRWTPELHECFVQAVNKLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 270 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.291 | 213 | 273 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-18 | 214 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-32 | 214 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-26 | 216 | 270 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-10 | 218 | 269 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-25 | 299 | 346 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MSSSLPLLPK SLKDIPIPRN PQNILMPGQL PNDSTPLHHS APQSATLHPR ANAVRSSYSA 60 MVGYSSSPID CVSSHERHFM AAPFISQSSN IEVIQSLCNT PNTPGGHTEP TWFPASVNGA 120 PDYMNTITIP DNHTQSATST LTSDVAKQNE WWADIIDDDW KDILDATATD SQSKSMSQPC 180 NSAASQPAFN QSTPSHSGEI CPVTSPPNNN NASSSKQRMR WTPELHECFV QAVNKLGGSE 240 KATPKGVLKL MKVDGLTIYH VKSHLQKYRT ARYKPDLSEG ATQQGKTTEE LSLDLKTSMD 300 LTEALRLQME VQKRLHEQLE IQRKLQLRIE EQGKYLQKMF EKQCKSSTHN VQDPSSGDAE 360 TQSESSNSAD KDSDAALDPT RTGDNPHGIS AKFGENSTNV GANEKTGIEF PDSLATANGG 420 SELPQEKRLA TANVGSELPQ EKRRRVHES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-30 | 216 | 274 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 441 | 445 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G14050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632603.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 | ||||
Swissprot | B8ANX9 | 0.0 | PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | A0A0D9VTL5 | 0.0 | A0A0D9VTL5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G14050.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1971 | 37 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 6e-64 | phosphate starvation response 1 |