PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G13950.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 384aa    MW: 41003.4 Da    PI: 9.0267
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G13950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-5391421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+v+yL+++++++++++ ++i++vdiyk++PwdLp+k++ +++ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s
  LPERR03G13950.1   9 LPPGFRFHPTDEELIVHYLRNRAASSPCPV-SIIADVDIYKFDPWDLPSKAAYGDREWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHS 101
                      79****************************.89***************8888899*************************************** PP

              NAM  95 k.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +       ++e vg+kk Lvfykgr pkg+kt+W+mheyrl
  LPERR03G13950.1 102 SsggggggRNESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 142
                      999998887788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-644176IPR003441NAC domain
PROSITE profilePS5100561.2599176IPR003441NAC domain
PfamPF023652.9E-2710142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVMSNPAMLP PGFRFHPTDE ELIVHYLRNR AASSPCPVSI IADVDIYKFD PWDLPSKAAY  60
GDREWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSSGGGGGGR NESVGVKKAL  120
VFYKGRPPKG TKTNWIMHEY RLAAADAHAA NTYRPMKFRN ASMRLDDWVL CRIYKKSSHA  180
SPMAVPPLSD HEQDEPCAAL DENTPMYAPP SSAAAMILQG AGGGAFPPMH GAGAATQRMQ  240
KIPSISDLLN EYSLSQLFDD GGAGAALDMA PRPQPHHHHH AELVGHPVLT NHFLMNNSMA  300
HLAQMDSSSA VAAASTSAVA AGAAVEAATG KRKRSDAELT SQPAAAKKPN GSCVGATFQI  360
GSGLQGSSLG LGSQMLLHSN MGMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-72918117170NO APICAL MERISTEM PROTEIN
1ut4_B2e-72918117170NO APICAL MERISTEM PROTEIN
1ut7_A2e-72918117170NO APICAL MERISTEM PROTEIN
1ut7_B2e-72918117170NO APICAL MERISTEM PROTEIN
3swm_A2e-72918120173NAC domain-containing protein 19
3swm_B2e-72918120173NAC domain-containing protein 19
3swm_C2e-72918120173NAC domain-containing protein 19
3swm_D2e-72918120173NAC domain-containing protein 19
3swp_A2e-72918120173NAC domain-containing protein 19
3swp_B2e-72918120173NAC domain-containing protein 19
3swp_C2e-72918120173NAC domain-containing protein 19
3swp_D2e-72918120173NAC domain-containing protein 19
4dul_A2e-72918117170NAC domain-containing protein 19
4dul_B2e-72918117170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G13950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2435140.0AK243514.1 Oryza sativa Japonica Group cDNA, clone: J100075D15, full insert sequence.
GenBankJN9823130.0JN982313.1 Oryza sativa Japonica Group NAC transcription factor 58 (NAC58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632401.10.0NAC transcription factor 47
SwissprotA0SPJ99e-87NAM2_HORVV; NAC transcription factor NAM-2
TrEMBLA0A0D9VTK30.0A0A0D9VTK3_9ORYZ; Uncharacterized protein
STRINGLPERR03G13950.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-84NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]