PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR03G13930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 360aa MW: 39416.6 Da PI: 5.6079 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.8 | 1.5e-55 | 23 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee++++yL++k+ ++++++ vi +vd++k+ePw+Lp+++k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke+++ LPERR03G13930.1 23 LPPGFRFHPTDEEIISHYLAPKALDNHFST-GVIGDVDLNKCEPWHLPAMAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEIFR 115 79**************************99.99***************988999**************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +g lvg+kktLvfy grap+gekt Wvmhe+rle LPERR03G13930.1 116 GRGILVGMKKTLVFYLGRAPRGEKTGWVMHEFRLE 150 ********************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-64 | 17 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.18 | 23 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-29 | 24 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000975 | Molecular Function | regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MSEVSVINQA EVEQETAAAP LDLPPGFRFH PTDEEIISHY LAPKALDNHF STGVIGDVDL 60 NKCEPWHLPA MAKMGEKEWY FFCHKDRKYP TGTRTNRATE SGYWKATGKD KEIFRGRGIL 120 VGMKKTLVFY LGRAPRGEKT GWVMHEFRLE GKLPTGLPRS AKDQWAVCKV FNKELVLAAR 180 NAPMATTGAA TDDAGIERVG SFGFLADFAE LPPLMDPPFV ADIDDNKASV STSGHAALAD 240 GSYHAAPAGV GYQQVKREEP LSLPLPYMPH QQPQRMMYAD LYFSLPAMHA GDLTASAIRK 300 YCKAEQVSGQ TSALSASRDT GLSTDPNAAG CAEISSAVTP TSQPFPEFDD PILGLEDFWN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-52 | 12 | 174 | 9 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-52 | 12 | 174 | 9 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-52 | 12 | 174 | 9 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-52 | 12 | 174 | 9 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-52 | 12 | 174 | 9 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-52 | 12 | 174 | 9 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-52 | 12 | 174 | 9 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-52 | 12 | 174 | 9 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00332 | DAP | Transfer from AT3G04060 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR03G13930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK065989 | 0.0 | AK065989.1 Oryza sativa Japonica Group cDNA clone:J013046E14, full insert sequence. | |||
GenBank | JN185445 | 0.0 | JN185445.1 Oryza sativa Japonica Group NAC transcription factor 39 (NAC39) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633121.1 | 0.0 | NAC domain-containing protein 92 | ||||
TrEMBL | A0A0D9VTK1 | 0.0 | A0A0D9VTK1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G13930.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04060.1 | 6e-92 | NAC domain containing protein 46 |