PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G13930.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 360aa    MW: 39416.6 Da    PI: 5.6079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G13930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.5e-55231501129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdee++++yL++k+ ++++++  vi +vd++k+ePw+Lp+++k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke+++
  LPERR03G13930.1  23 LPPGFRFHPTDEEIISHYLAPKALDNHFST-GVIGDVDLNKCEPWHLPAMAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEIFR 115
                      79**************************99.99***************988999**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +g lvg+kktLvfy grap+gekt Wvmhe+rle
  LPERR03G13930.1 116 GRGILVGMKKTLVFYLGRAPRGEKTGWVMHEFRLE 150
                      ********************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-6417173IPR003441NAC domain
PROSITE profilePS5100558.1823173IPR003441NAC domain
PfamPF023658.0E-2924149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSEVSVINQA EVEQETAAAP LDLPPGFRFH PTDEEIISHY LAPKALDNHF STGVIGDVDL  60
NKCEPWHLPA MAKMGEKEWY FFCHKDRKYP TGTRTNRATE SGYWKATGKD KEIFRGRGIL  120
VGMKKTLVFY LGRAPRGEKT GWVMHEFRLE GKLPTGLPRS AKDQWAVCKV FNKELVLAAR  180
NAPMATTGAA TDDAGIERVG SFGFLADFAE LPPLMDPPFV ADIDDNKASV STSGHAALAD  240
GSYHAAPAGV GYQQVKREEP LSLPLPYMPH QQPQRMMYAD LYFSLPAMHA GDLTASAIRK  300
YCKAEQVSGQ TSALSASRDT GLSTDPNAAG CAEISSAVTP TSQPFPEFDD PILGLEDFWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-52121749169NAC domain-containing protein 19
3swm_B6e-52121749169NAC domain-containing protein 19
3swm_C6e-52121749169NAC domain-containing protein 19
3swm_D6e-52121749169NAC domain-containing protein 19
3swp_A6e-52121749169NAC domain-containing protein 19
3swp_B6e-52121749169NAC domain-containing protein 19
3swp_C6e-52121749169NAC domain-containing protein 19
3swp_D6e-52121749169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G13930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0659890.0AK065989.1 Oryza sativa Japonica Group cDNA clone:J013046E14, full insert sequence.
GenBankJN1854450.0JN185445.1 Oryza sativa Japonica Group NAC transcription factor 39 (NAC39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633121.10.0NAC domain-containing protein 92
TrEMBLA0A0D9VTK10.0A0A0D9VTK1_9ORYZ; Uncharacterized protein
STRINGLPERR03G13930.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.16e-92NAC domain containing protein 46