PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G12580.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 416aa    MW: 44230.5 Da    PI: 6.7244
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G12580.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.3e-12345369226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ktelC+ + r+  C+yG+rC+FaHg
  LPERR03G12580.3 345 KTELCNKWERGALCSYGGRCRFAHG 369
                      8*********88************9 PP
2zf-CCCH18.63.3e-06382408127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt +C+ fa+   C+yG rC+F H+p
  LPERR03G12580.3 382 YKTLPCQMFAAASGCPYGHRCHFRHSP 408
                      9***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.4E-14338376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371343371IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6343370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-8343375IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9345369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-10377407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7378407IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4381408IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746381409IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEGELSFLSP ARPSCFSFED GCSGSPTWAS MVEALIDSPT SSVSGGRGGG DGGCNSLTRA  60
SPMEKLLDSL SSRVPHCRDA GDFSSLPWAS PLEKPLESVS SSISDGRGGG ISSPTRAFPS  120
ENLLVSPPSR DSDGRGVGND RGFHSLPWVS PLEKPLESPS SCASEGRGVG NGGGFRSLPW  180
ASPHDKALES PSSCVSDGRS GGYSSPLGSM AELLEAERLL RDAMAEIADL RRERLRLGAE  240
NLHLSLLLEE LESEQRNRTS AVAPPPPKPS VEDEAVAAAA QGGAPKSIAI RSPGYLAQKQ  300
PHGQAKPQRL RVRAPQAMEP MQEAAEAGDG KEVVEVEVHR QGAVKTELCN KWERGALCSY  360
GGRCRFAHGL QELRPVIRHP RYKTLPCQMF AAASGCPYGH RCHFRHSPLP AAESSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-18345407567Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G12580.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186681e-105AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372671e-105AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149591e-105AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-105CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880078.11e-168putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN81e-170C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A0D9VT310.0A0A0D9VT31_9ORYZ; Uncharacterized protein
STRINGLPERR03G12580.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-36C3H family protein