PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR03G12200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 35348.3 Da PI: 6.1787 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.3e-15 | 14 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ + +G+g+W++++++ g ++R++k+c++r+ +yl LPERR03G12200.1 14 KGPWTAEEDAKLLAYTSTHGTGNWTSVPQRAGreinsiscrLKRCGKSCRLRYTNYL 70 79*****************************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 78 | 119 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eE++l+v ++++lG++ W++Ia+ ++ gRt++++k++w++ LPERR03G12200.1 78 NFTQEEEDLIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 119 89******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-22 | 5 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.767 | 9 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.63E-28 | 11 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 13 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-14 | 14 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.56E-10 | 16 | 70 | No hit | No description |
PROSITE profile | PS51294 | 24.532 | 71 | 125 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 75 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.91E-12 | 78 | 121 | No hit | No description |
Pfam | PF00249 | 7.2E-15 | 78 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 331 aa Download sequence Send to blast |
MGRPPCCDKA NVKKGPWTAE EDAKLLAYTS THGTGNWTSV PQRAGREINS ISCRLKRCGK 60 SCRLRYTNYL RPNLKHENFT QEEEDLIVTL HAMLGSRWSL IANQLPGRTD NDVKNYWNTK 120 LSKKLRQRGI DPITHRPIAD LMHSIGTLAI RPSPASSSNS SSYLPPTSAA SPPATLPVFL 180 HDAPYFTAHH HQHQVVTKVD ADAPASPVDE KQNHLHQQIN WSDFLADDAA AHGAVDAQAP 240 QANALGMYQE GSVAAATGVV GGRAFGDVVV DGASGGDADD GAGDASAFID AILDCDKEMG 300 VDQLIAEMLA DPAYYGGGGG GSSSSEMGWG C |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 14 | 125 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR03G12200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK372736 | 1e-123 | AK372736.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3010N13. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649927.1 | 1e-169 | PREDICTED: myb-related protein Zm38-like | ||||
TrEMBL | A0A0D9VSZ1 | 0.0 | A0A0D9VSZ1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G12200.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11874 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56110.1 | 5e-62 | myb domain protein 103 |