PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G11720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 26369.6 Da PI: 7.1076 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.7 | 6e-36 | 60 | 170 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal...........peeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll+a pe+ reda+ss+vyeAearardPvyG++g + +l LPERR03G11720.1 60 PCAACKMLRRRCADGCVLAPYFPPTDPAKFSTAHRVFGASNIIKLLQARtslsrawgselPESAREDAVSSMVYEAEARARDPVYGCAGAVCRL 153 7*********************************************9863444444444466667***************************** PP DUF260 84 qqqleqlkaelallkee 100 q++ e+lk++la++++ LPERR03G11720.1 154 QKEAEELKVQLARAQAD 170 ************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.339 | 59 | 171 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-37 | 60 | 168 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDAGSINTAA NVTVAQQPHY WLSVSPPSSA SSTCSSPPPP VLVGNTSSSS TSHGTVVLSP 60 CAACKMLRRR CADGCVLAPY FPPTDPAKFS TAHRVFGASN IIKLLQARTS LSRAWGSELP 120 ESAREDAVSS MVYEAEARAR DPVYGCAGAV CRLQKEAEEL KVQLARAQAD LLNAQAQHAN 180 LVALVCVELA ASSHSRHGHH QQLAADHALP LTPHHHPAEY GGGGAYQYYG QPLGCYDSAA 240 WDEPRLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-38 | 59 | 173 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-38 | 59 | 173 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G11720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137074 | 3e-89 | AC137074.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence. | |||
GenBank | AK072515 | 3e-89 | AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence. | |||
GenBank | AP014959 | 3e-89 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 3e-89 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. | |||
GenBank | CT832143 | 3e-89 | CT832143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027J24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649894.1 | 4e-90 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 6e-58 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0D9VSS0 | 0.0 | A0A0D9VSS0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G11720.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-57 | LOB domain-containing protein 1 |