PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G10930.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 365aa MW: 37390.6 Da PI: 7.6653

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G10930.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	91.6	6.5e-29	90	142	2	54
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGgg 54 +e alkcprCdstntkfCyynnyslsqPr+fCk+CrryWt+ l+ v + gg LPERR03G10930.1 90 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRRVLLQAVLIPGG 142 67899************************************999998766444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	74	139	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-25	93	144	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	22.983	94	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MVFPSVPAYL DPPNWNNQQQ QGQPPRPANV DAAQHQQLPP AGTTAAPGEV GGLPSSSSSA 60 SAAAAAAAAQ QAVRPNSMAE RARLARAPQP EPALKCPRCD STNTKFCYYN NYSLSQPRHF 120 CKTCRRYWTR RVLLQAVLIP GGGGASPMPG GGGGGAIMTP AVMSSMSHHH LPFLGAAMHP 180 TGPNLGLTFS TAGFQALGGM HHHHVDAVDQ FPVASGGGAS LEQWRLPQQP SHSQQQFPFL 240 GGALDLPPPP PPMYQLGLEA NRAAGTGSTT AAEAFTLGQT SAAAAATSRQ EGGGSMKLED 300 SKGLEMSLQR QYMAALRQGD GIWGGNGGDG GGNGGGGGGS WTMNFPGFHS STSADGGGDD 360 GGGVM

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MVFPSVPAYL DPPNWNNQQQ QGQPPRPANV DAAQHQQLPP AGTTAAPGEV GGLPSSSSSA  60
SAAAAAAAAQ QAVRPNSMAE RARLARAPQP EPALKCPRCD STNTKFCYYN NYSLSQPRHF  120
CKTCRRYWTR RVLLQAVLIP GGGGASPMPG GGGGGAIMTP AVMSSMSHHH LPFLGAAMHP  180
TGPNLGLTFS TAGFQALGGM HHHHVDAVDQ FPVASGGGAS LEQWRLPQQP SHSQQQFPFL  240
GGALDLPPPP PPMYQLGLEA NRAAGTGSTT AAEAFTLGQT SAAAAATSRQ EGGGSMKLED  300
SKGLEMSLQR QYMAALRQGD GIWGGNGGDG GGNGGGGGGS WTMNFPGFHS STSADGGGDD  360
GGGVM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G10930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629100.1	1e-126	dof zinc finger protein DOF3.6 isoform X1
TrEMBL	A0A0D9VSH9	0.0	A0A0D9VSH9_9ORYZ; Uncharacterized protein
STRING	LPERR03G10930.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	3e-31	Dof family protein