PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G09600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9473.2 Da PI: 4.7381 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.4e-10 | 2 | 46 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W+t E +++ +a + + + +W+++a+ +g gRt+ +++ ++ LPERR03G09600.1 2 AWSTAENQRFERALAFYDEDtpgRWELVAAAVGGGRTADDVRRHY 46 7*****************99************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.748 | 1 | 50 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.0E-7 | 1 | 46 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-4 | 2 | 46 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.48E-6 | 2 | 46 | No hit | No description |
SMART | SM00717 | 9.0E-4 | 2 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.12E-10 | 3 | 56 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MAWSTAENQR FERALAFYDE DTPGRWELVA AAVGGGRTAD DVRRHYDVLI VDVDKIESGN 60 YGYPGSQGNG NGRNNDSNTN RGRYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-19 | 3 | 81 | 11 | 88 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G09600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797915.1 | 1e-29 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 1e-22 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A0D9VRZ1 | 2e-55 | A0A0D9VRZ1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G09600.1 | 3e-56 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-20 | RAD-like 1 |