PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G09600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 85aa    MW: 9473.2 Da    PI: 4.7381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G09600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.4e-10246344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W+t E +++ +a + +  +   +W+++a+ +g gRt+ +++ ++
  LPERR03G09600.1  2 AWSTAENQRFERALAFYDEDtpgRWELVAAAVGGGRTADDVRRHY 46
                     7*****************99************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.748150IPR017877Myb-like domain
PfamPF002491.0E-7146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-4246IPR009057Homeodomain-like
CDDcd001672.48E-6246No hitNo description
SMARTSM007179.0E-4252IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-10356IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MAWSTAENQR FERALAFYDE DTPGRWELVA AAVGGGRTAD DVRRHYDVLI VDVDKIESGN  60
YGYPGSQGNG NGRNNDSNTN RGRYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-193811188RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G09600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797915.11e-29protein RADIALIS-like 3
SwissprotQ6NNN01e-22RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0D9VRZ12e-55A0A0D9VRZ1_9ORYZ; Uncharacterized protein
STRINGLPERR03G09600.13e-56(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-20RAD-like 1