PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G09520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NF-YC | ||||||||
Protein Properties | Length: 236aa MW: 24892.9 Da PI: 5.0683 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 169.7 | 3.4e-53 | 32 | 137 | 1 | 101 |
NF-YC 1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+f LPERR03G09520.1 32 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVF 125 89*****997665555689*************************************************************************** PP NF-YC 90 dflvdivprdel 101 dflvdivpr+e LPERR03G09520.1 126 DFLVDIVPREEA 137 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.55E-32 | 36 | 145 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.4E-37 | 48 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-20 | 56 | 119 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048586 | Biological Process | regulation of long-day photoperiodism, flowering | ||||
GO:0051247 | Biological Process | positive regulation of protein metabolic process | ||||
GO:2000905 | Biological Process | negative regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MHAEASDTFA GGAGGGPPPV PHHHLLQQQQ AQLQAFWAYQ RQEAERASAS DFKNHQLPLA 60 RIKKIMKADE DVRMISAEAP VLFAKACELF ILELTIRSWL HAEENKRRTL QRNDVAAAIA 120 RTDVFDFLVD IVPREEAKEE PGSAALGFAA GGPGAIGGAA GGGPAAGLPY YYPPMGQPAP 180 MMPAWHVPAW DPAWQQGAAP DVDQGAAGSF SEEGQQGFAG HGGAAAGFPP APPSSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-51 | 40 | 134 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 112 | RRTLQRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G09520.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. | |||
GenBank | CT836539 | 0.0 | CT836539.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN017G01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147992.1 | 1e-106 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_008675138.1 | 1e-106 | nuclear transcription factor Y subunit C-1 isoform X1 | ||||
Swissprot | A6BLW4 | 5e-94 | NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A0D9VRX9 | 1e-168 | A0A0D9VRX9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G09520.1 | 1e-169 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7345 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 7e-64 | nuclear factor Y, subunit C4 |
Publications ? help Back to Top | |||
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