PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G08910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 283aa    MW: 29398.2 Da    PI: 6.7839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G08910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028129151123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  LPERR03G08910.1 129 FTCNYCQRKFFSSQALGGHQNAH 151
                      89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-6127156No hitNo description
PROSITE profilePS5015711.323129156IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLNEVVLFIR DMLMLWYLRS IMLLLLLLRQ KPSSESGVPT AIVNSIGMKS SSNAAAAACQ  60
EHGEDVSEIS SQAASNNEPC DSSSRKLSLD LSLTVVAAAA ATESSTTDSG GTRPVATPAA  120
TAREPARVFT CNYCQRKFFS SQALGGHQNA HRRERTLARR AAVRLDAFPY AAAAAAYADV  180
ASLPLYGAGL YPIGIQAHAS AHHPAAAVGP SPAAGRAARG LLGPMPFFVQ ADEEASLFGW  240
PGSFKPPPPP PAAAAVNSGG SSNLGGSVVV QGDDDEPDLT LRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G08910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628354.12e-83zinc finger protein 7
RefseqXP_025879942.12e-83zinc finger protein 7
TrEMBLA0A0D9VRQ20.0A0A0D9VRQ2_9ORYZ; Uncharacterized protein
STRINGLPERR03G08910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-17zinc finger protein 4