PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G08770.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family BBR-BPC
Protein Properties Length: 304aa    MW: 33615.3 Da    PI: 10.6182
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G08770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind86.68.6e-2712311200
        GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.......rernlalsekkaavaerd.................maflqrdkala 68 
                      mddd+s + rn+g+ye     k nlglqlmss++ ++d+k+           +  ++++a++++rd                 ++f+++d++++
  LPERR03G08770.1   1 MDDDASLSfRNWGFYETM---KGNLGLQLMSSVPaDQDTKPllqngtfL---QHHTHHNAPHHPRDcgggasgglpteppavhIDFARNDAWMH 88 
                      9**************965...************99******66433211...22356778899******************************* PP

        GAGA_bind  69 e.rnkalverdnkllalllvensla..................salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaee 143
                        ++++ ++ +++ l  ++v+   +                  +++p+g+++l++++ +++lq+     ++++  +  +ee+++++ iee+  +
  LPERR03G08770.1  89 PsQHQHPHPSQHQHLREQKVHAPPVrvgpaghighpglgghavHHHPTGYGMLPEAHGLHTLQM-----MQPQEPPPLKEEHISEPLIEENSVV 177
                      94455556666666666655554447889999***********9********************.....6666666567777999999997666 PP

        GAGA_bind 144 akekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlng 200
                       +e ++kk  +++++pk+++ kk+kk +++++++ +++++ +r++ +kk +++v+ng
  LPERR03G08770.1 178 RSELPTKK--RKQRQPKTPRPKKPKK-PPAPREDGAPNGHAPRRRGPKKALGMVING 231
                      66665555..88999**********9.999*9*******99**************96 PP
2GAGA_bind169.83.9e-52230304227301
        GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      nGGWqSaCCtt+iS+yPLP+stkrrg RiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
  LPERR03G08770.1 230 NGGWQSACCTTSISTYPLPMSTKRRGVRIAGRKMSQGAFKKVLEKLAGEGYNLANPIDLKTFWAKHGTNKFVTIR 304
                      7*************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012267.0E-1311304IPR010409GAGA-binding transcriptional activator
PfamPF062174.7E-351231IPR010409GAGA-binding transcriptional activator
PfamPF062172.1E-50230304IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDDDASLSFR NWGFYETMKG NLGLQLMSSV PADQDTKPLL QNGTFLQHHT HHNAPHHPRD  60
CGGGASGGLP TEPPAVHIDF ARNDAWMHPS QHQHPHPSQH QHLREQKVHA PPVRVGPAGH  120
IGHPGLGGHA VHHHPTGYGM LPEAHGLHTL QMMQPQEPPP LKEEHISEPL IEENSVVRSE  180
LPTKKRKQRQ PKTPRPKKPK KPPAPREDGA PNGHAPRRRG PKKALGMVIN GGWQSACCTT  240
SISTYPLPMS TKRRGVRIAG RKMSQGAFKK VLEKLAGEGY NLANPIDLKT FWAKHGTNKF  300
VTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184199KRKQRQPKTPRPKKPK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G08770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.11e-123protein Barley B recombinant
RefseqXP_021309578.11e-123protein Barley B recombinant
SwissprotQ8GUC31e-122BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A0D9VRN80.0A0A0D9VRN8_9ORYZ; Uncharacterized protein
STRINGLPERR03G08770.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.36e-39basic pentacysteine 2