PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G08760.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 407aa    MW: 43025.1 Da    PI: 10.5875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G08760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.7e-0779101123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C++Cg+ F r  nL+ H r+H
  LPERR03G08760.1  79 YVCEICGQGFQREQNLQMHRRRH 101
                      9*********************9 PP
2zf-C2H210.90.0015175197123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  C k +  +s++k H++t+
  LPERR03G08760.1 175 WVCARCAKGYAVQSDYKAHLKTC 197
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.21E-778101No hitNo description
Gene3DG3DSA:3.30.160.601.3E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.5E-479101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.75979101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355110139169IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.21E-7170195No hitNo description
SMARTSM00355270175202IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MALVKSHHQM LASSSTSSSS PSSQQQPPPS NSSSLTATAT ATADQPSPVK RKRRPPGTPD  60
PDAEVVALSP RTLLESDRYV CEICGQGFQR EQNLQMHRRR HKVPWRLVKR APAPAAASAE  120
DGGAAGAGGG GGAARKRVFV CPEPSCLHHD PAHALGDLVG IKKHFRRKHG GRRQWVCARC  180
AKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACNSGRVRG EVMPVATSTL  240
PVIRPAALRH HPPPPLPPPP PELQLLPAST TAFSSSNSTI TTTTTTTSHV EQHTTTTTTK  300
LQLSIGSEEE EERRRGGDQE ARRRAALEEK AAADAARERA REEAAAAERA XARAARPRGA  360
AAGAGHLPRR SLAVMSMASA VDGHGVGAAA AAVAREHLRG GGVGAGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-17171233365Zinc finger protein JACKDAW
5b3h_F7e-17171233365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G08760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376980.0CT837698.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence.
GenBankJQ6815280.0JQ681528.1 Oryza sativa Indica Group cultivar Zhongxian3037 LPA1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629419.11e-140protein indeterminate-domain 16
TrEMBLA0A0D9VRN70.0A0A0D9VRN7_9ORYZ; Uncharacterized protein
STRINGLPERR03G08760.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-87C2H2-like zinc finger protein