PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G08060.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 407aa    MW: 45290.2 Da    PI: 4.6026
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G08060.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.21.9e-31501412103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++e+isw e g sfvv d++ f++  L+++Fkh+nf+SF+RQLn+YgF+kv+ ++         we++++ F  g+k+ll+
  LPERR03G08060.2  50 FLTKVYDMVSDPATDEVISWGEGGGSFVVRDSHAFEN-DLHRHFKHRNFTSFIRQLNTYGFRKVHPDR---------WEWANEGFIMGQKHLLK 133
                      9************************************.8**************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +ikr+k++
  LPERR03G08060.2 134 TIKRRKKS 141
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-3242133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-4846138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.21E-2946138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-2750138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-165073IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-168799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-16100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGSKKQSSQH PATASPAPAV GGGGGEVSGD VGASTANGTV VPKPSEVAPF LTKVYDMVSD  60
PATDEVISWG EGGGSFVVRD SHAFENDLHR HFKHRNFTSF IRQLNTYGFR KVHPDRWEWA  120
NEGFIMGQKH LLKTIKRRKK SSQEAPSEMQ KAPVKTAPGT ENIEIGKYGG LEKEVETLKR  180
DKALLMQQLV DLRHYQQTSN LEVQNLIERL QVMDQNQQQM MALLAIVVQN PSFLNQLVQQ  240
QQQQQRRTSW WSPDGSKKRR FHALEQAPGT DQENSGRGAQ IVEYLPSVPE TSDQVNQVDG  300
AICLANTQPV PSPAVATPMD IQTTANVGDT LGPSEDPLAD NSTLHEWDDD DMQLLFDDNL  360
DPILPPFEND DQVNPPLSIQ DYDFPQLDQD CLMEAQYNSN NPQYGND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-204414114123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G08060.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444900.0AY344490.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690243.10.0PREDICTED: heat stress transcription factor A-9
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLA0A0D9VRF00.0A0A0D9VRF0_9ORYZ; Uncharacterized protein
STRINGLPERR03G08060.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.23e-70heat shock factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]