PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G08040.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARR-B
Protein Properties Length: 685aa    MW: 73401.5 Da    PI: 6.4671
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G08040.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28202255155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  LPERR03G08040.2 202 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 255
                      79*******************.********************************8 PP
2Response_reg78.42.5e-26181261109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+ + +l+++l + +y +++++++++ al++l+e++  +D+i+ D+ mp+mdG++ll+     e++lp+i+++a +  + + + +k 
  LPERR03G08040.2  18 VLVVDDDPTCLAVLKRMLLECRY-DATTCSQATRALTMLRENRrgYDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVMKGIKH 109
                      89*********************.***************99999********************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel +
  LPERR03G08040.2 110 GACDYLIKPVRMEELKN 126
                      **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.3E-1921668IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.3E-4215150No hitNo description
SuperFamilySSF521727.54E-3615142IPR011006CheY-like superfamily
SMARTSM004485.5E-3016128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.94817132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.4E-2318126IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.65E-2719131No hitNo description
SuperFamilySSF466894.57E-20199259IPR009057Homeodomain-like
PROSITE profilePS5129411.674199258IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29199260IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-25202255IPR006447Myb domain, plants
PfamPF002497.8E-7204253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MAPVDDGGGG EFPVGMKVLV VDDDPTCLAV LKRMLLECRY DATTCSQATR ALTMLRENRR  60
GYDVIISDVH MPDMDGFRLL ELVGLEMDLP VIMMSADSRT DIVMKGIKHG ACDYLIKPVR  120
MEELKNIWQH VVRKKFNESK EHEHSGSLDD TDRTRPANND NEYASSANDG ADGSWKSQKK  180
KRDKDEDDGE LESGDPSSTS KKPRVVWSVE LHQQFVNAVN HLGIDKAVPK KILELMNVPG  240
LTRENVASHL QKFRLYLKRI AQHHAGIANP FCPPASNAKV GSLGGLDFQA LAASGQIPPQ  300
ALAALQDELL GRPTNSLVLP GRDQSSLRLA AVKGNKPHGE REIAFGQPIY KCQNNAYGAF  360
PQSSPTVGGM PSFSAWPNNK LGMADSTGTL GSMSNSQNSN IVLHELQQQP DAMLSGTIHS  420
LDVKPSGIVP SQSLNTFSTS EGLSPNQNTL MIPTQSSGFL AAMPPSMKHE PVLATSQPSS  480
SLLGGIDLVN QASTSQSLMS THGGLVNRNP NVIPSQGIST FQTTNNPYLV NPNSMGVGSK  540
QQTGVLKTEN SDTLSHSYGY LGGNTPPMDS CLLSSQSKNT QFGLLGQDDI TGSWSPLPNI  600
DSFGNTVGLS HPGSGSSSFQ SSNVALGKLP DQGRGKNHGF VGKGTCIPSR FAVDEIESPP  660
NNLSHSIGSS GDIMSPDIFG FSGQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24198261164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G08040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2467800.0AB246780.1 Oryza sativa Japonica Group ORR1 mRNA for B-type response regulator, complete cds.
GenBankAK1118640.0AK111864.1 Oryza sativa Japonica Group cDNA clone:J033025G23, full insert sequence.
GenBankAK1118990.0AK111899.1 Oryza sativa Japonica Group cDNA clone:J023034P21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630577.10.0two-component response regulator ORR21
RefseqXP_015630578.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A0D9VRE80.0A0A0D9VRE8_9ORYZ; Two-component response regulator
STRINGLPERR03G08040.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-117response regulator 1