PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G07880.6
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 749aa    MW: 84513 Da    PI: 5.2262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G07880.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.81e-10701831128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp+G++F+P+d++l+  +L+++v + +   + +i+e+ i +v+        +++ +  yfF+k+ k  +  +++ + t+   W+++ +  +++ 
  LPERR03G07880.6  70 LPRGVEFNPSDSDLL-WHLAAEVGNGQACRHPFIDEF-IKSVD--------ETDGRVSYFFHKNFKVCN--SENGKCTS---WQKSENPISIIL 148
                      699************.789999999886554556664.44443........2345678*****998875..45666666...************ PP

              NAM  95 kkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +g+  g+k+ +v+y  + + ++++ tdW  h+y++
  LPERR03G07880.6 149 -DGNIQGCKEEFVLYayETDGNSPQVTDWRWHQYHI 183
                      .999**********977667788889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-1963201IPR003441NAC domain
PROSITE profilePS5100512.97170201IPR003441NAC domain
PfamPF023654.6E-771183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MAKEVAPPPS PSPCLDSDAE DVPLSVRRRR LLRPQAQRVD SKPPATERRD ASAEAVEGAG  60
GAAQQGWPGL PRGVEFNPSD SDLLWHLAAE VGNGQACRHP FIDEFIKSVD ETDGRVSYFF  120
HKNFKVCNSE NGKCTSWQKS ENPISIILDG NIQGCKEEFV LYAYETDGNS PQVTDWRWHQ  180
YHIKSTEKGE GELVVSKIFY KSENNNFKWA EKAHAQSALD ASATDDDSKE ELRLENHSSK  240
MVIESSILQG NENKQKQIQK ETCPDQSKLI PFNMADNMSI GNQINDHDEI KELDHMSLQE  300
RYRILLAEKH SCSAVVSFEQ CAIDGTENSC RPETSGLIPK RIHEGTPFRD GMHSMLQEIS  360
SGPPSIDSIG NDNNRMLLAE GLANNQQSQE SGCNSSHVEG LLPSLRIKNE VTGNELPLII  420
CGLTSMNTAE LTAKKKNTVN HDGALAYCSQ KRKGRKTVRN PSEKTLEECS DRNGEDTTYF  480
SRRKRRRKTA TDSIETALEE DAPGLLQILI DRGILVNEIK LYGVEEDDDM VPDCTESDFQ  540
DLENVITKLF PQRTSLLKLA ARQVKGEKAI YCLTCLISLI EQSRYLQFRD CPVEWGWCRD  600
LQSFIFIFKS HNRIVLERPE YGYATYFFEI VKSLPIEWQI QRLVTAMKLS GCGRTALIEN  660
KPLVVGEDLT EGEARVLEEY GWLPNSGLGT MLNYRDRVVH DRWNEKSVTD WRTKIGKLLM  720
SGYSEGHLVL SHIPTKVGKL EEDTEMVSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1481487RRKRRRK
2482486RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G07880.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1052830.0AK105283.1 Oryza sativa Japonica Group cDNA clone:001-116-E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558473.10.0uncharacterized protein LOC100826588 isoform X1
TrEMBLA0A0D9VRC30.0A0A0D9VRC3_9ORYZ; Uncharacterized protein
STRINGLPERR03G07880.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-27NAC family protein