PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G07880.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 850aa    MW: 95280.5 Da    PI: 5.4491
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G07880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.51.2e-10701831128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp+G++F+P+d++l+  +L+++v + +   + +i+e+ i +v+        +++ +  yfF+k+ k  +  +++ + t+   W+++ +  +++ 
  LPERR03G07880.1  70 LPRGVEFNPSDSDLL-WHLAAEVGNGQACRHPFIDEF-IKSVD--------ETDGRVSYFFHKNFKVCN--SENGKCTS---WQKSENPISIIL 148
                      699************.789999999886554556664.44443........2345678*****998875..45666666...************ PP

              NAM  95 kkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +g+  g+k+ +v+y  + + ++++ tdW  h+y++
  LPERR03G07880.1 149 -DGNIQGCKEEFVLYayETDGNSPQVTDWRWHQYHI 183
                      .999**********977667788889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-1963201IPR003441NAC domain
PROSITE profilePS5100512.97170201IPR003441NAC domain
PfamPF023655.6E-771183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MAKEVAPPPS PSPCLDSDAE DVPLSVRRRR LLRPQAQRVD SKPPATERRD ASAEAVEGAG  60
GAAQQGWPGL PRGVEFNPSD SDLLWHLAAE VGNGQACRHP FIDEFIKSVD ETDGRVSYFF  120
HKNFKVCNSE NGKCTSWQKS ENPISIILDG NIQGCKEEFV LYAYETDGNS PQVTDWRWHQ  180
YHIKSTEKGE GELVVSKIFY KSENNNFKWA EKAHAQSALD ASATDDDSKE ELRLENHSSK  240
MVIESNENKQ KQIQKETCPD QSKLIPFNMA DNMSIGNQIN DHDEIKELDH MSLQERYRIL  300
LAEKHSCSAV VSFEQCAIDG TENSCRPETS GLIPKRIHEG TPFRDGMHSM LQEISSGPPS  360
IDSIGNDNNR MLLAEGLANN QQSQESGCVS GLLSMSSPAV PPQCQVVCSH DLLVNGNTLI  420
YSGEPSSSLT PTFGDESIQL KGTEDRTFLV DVKLEPVLEG NSSHVEGLLP SLRIKNEVTG  480
NELPLIICGL TSMNTAELTA KKKNTVNHDG ALAYCSQKRK GRKTVRNPSE KTLEECSDRN  540
GEDTTYFSRR KRRRKTATDS IETALEEDAP GLLQILIDRG ILVNEIKLYG VEEDDDMVPD  600
CTESDFQDLE NVITKLFPQR TSLLKLAARQ VKGEKAIYCL TCLISLIEQS RYLQFRDCPV  660
EWGWCRDLQS FIFIFKSHNR IVLERPEYGY ATYFFEIVKS LPIEWQIQRL VTAMKLSGCG  720
RTALIENKPL VVGEDLTEGE ARVLEEYGWL PNSGLGTMLN YRDRVVHDRW NEKSVTDWRT  780
KIGKLLMSGY SEGHLVLSHI PTKVGKLEED TEIRATGSSY QPSLRSTVPN LAAVRGMKIS  840
RLMIPGRMRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1548554RRKRRRK
2549553RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G07880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1052830.0AK105283.1 Oryza sativa Japonica Group cDNA clone:001-116-E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632079.10.0uncharacterized protein LOC4332096
TrEMBLA0A0D9VRB80.0A0A0D9VRB8_9ORYZ; Uncharacterized protein
STRINGLPERR03G07880.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-27NAC family protein