PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G07620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | YABBY | ||||||||
Protein Properties | Length: 195aa MW: 21848.1 Da PI: 8.7243 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 61 | 4.9e-19 | 1 | 46 | 1 | 46 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46 +d++s se++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l LPERR03G07620.1 1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLS 46 578999************************************9984 PP | |||||||
2 | YABBY | 95.4 | 1.3e-29 | 80 | 146 | 96 | 162 |
YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 ++ +s ++e +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa LPERR03G07620.1 80 QPLPLISPTSNEASPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 146 4445568889999****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.8E-46 | 6 | 147 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-8 | 91 | 148 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.9E-5 | 101 | 148 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010254 | Biological Process | nectary development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0048479 | Biological Process | style development |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDLVSPSEHL CYVRCTYCNT VLAVGVPCKR LMDTVTVKCG HCNNLSFLSP RPPMVQPLSP 60 TDHPLGPFHQ GPCTDCRRNQ PLPLISPTSN EASPRAPFVV KPPEKKHRLP SAYNRFMREE 120 IQRIKAAKPD IPHREAFSMA AKNWAKCDPR CSSTVSTSNS NPEPRVVSAP VPHQERTTEQ 180 VVESFDIFKQ MERSG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00220 | DAP | Transfer from AT1G69180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G07620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB106553 | 0.0 | AB106553.1 Oryza sativa Japonica Group DROOPING LEAF mRNA for DL protein, complete cds. | |||
GenBank | AY494713 | 0.0 | AY494713.1 Oryza sativa (japonica cultivar-group) drooping leaf (DL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690408.1 | 1e-131 | PREDICTED: protein DROOPING LEAF isoform X2 | ||||
Swissprot | Q76EJ0 | 1e-130 | YABDL_ORYSJ; Protein DROOPING LEAF | ||||
TrEMBL | A0A0D9VR88 | 1e-142 | A0A0D9VR88_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G07620.2 | 1e-132 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 5e-53 | YABBY family protein |