PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G04590.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 433aa MW: 46235 Da PI: 8.1132

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G04590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	100	160	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s LPERR03G04590.1 100 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 160 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	96	149	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-32	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MGECKVASGG GGGGDGLIKL FGKTIPVPES GCGGAGAGDV EKDCRTEPKT QENILQDSTS 60 PPPQPEVVDT EDSSGAKNSS ENQQQQGGDT ANQKEKLKKP DKILPCPRCS SMDTKFCYYN 120 NYNINQPRHF CKNCQRYWTA GGAMRNVPVG AGRRKSKSAS AASHFLQRVR AALPGDPPLY 180 APVKTNGTVL SFGSDLSTLD LTEQMKHIKD KFIPITGIKN TDEMSVGSCA EGLTKIEDSN 240 QVNLKEKVSA DKSANVPHHP CMNGGTMWPF GVTPPPAYYT SSIAIPFYPA AAAYWGCMVP 300 GAWNAPWPSQ SQSQSVSSSS AASPVSTMTN CFKLGKHPRD VDDELDSKGN GKVWVPKTVR 360 IDDVDEVARS SIWSLIGIKG DKVAADHGRG CKLAKVFEAK DDGKATHTVI SSLPFMQGNP 420 AALTRSVTFQ EGS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MGECKVASGG GGGGDGLIKL FGKTIPVPES GCGGAGAGDV EKDCRTEPKT QENILQDSTS  60
PPPQPEVVDT EDSSGAKNSS ENQQQQGGDT ANQKEKLKKP DKILPCPRCS SMDTKFCYYN  120
NYNINQPRHF CKNCQRYWTA GGAMRNVPVG AGRRKSKSAS AASHFLQRVR AALPGDPPLY  180
APVKTNGTVL SFGSDLSTLD LTEQMKHIKD KFIPITGIKN TDEMSVGSCA EGLTKIEDSN  240
QVNLKEKVSA DKSANVPHHP CMNGGTMWPF GVTPPPAYYT SSIAIPFYPA AAAYWGCMVP  300
GAWNAPWPSQ SQSQSVSSSS AASPVSTMTN CFKLGKHPRD VDDELDSKGN GKVWVPKTVR  360
IDDVDEVARS SIWSLIGIKG DKVAADHGRG CKLAKVFEAK DDGKATHTVI SSLPFMQGNP  420
AALTRSVTFQ EGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G04590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060900	0.0	AK060900.1 Oryza sativa Japonica Group cDNA clone:001-035-D05, full insert sequence.
GenBank	AK104523	0.0	AK104523.1 Oryza sativa Japonica Group cDNA clone:006-303-F03, full insert sequence.
GenBank	AY224429	0.0	AY224429.1 Oryza sativa (japonica cultivar-group) isolate 20575 putative H-protein promoter binding factor-2a mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631794.1	0.0	cyclic dof factor 1
TrEMBL	A0A0D9VQ06	0.0	A0A0D9VQ06_9ORYZ; Uncharacterized protein
STRING	LPERR03G04590.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	9e-56	cycling DOF factor 2