PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G04120.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 558aa    MW: 65058.6 Da    PI: 5.0989
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G04120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.66.8e-322423322101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+++++ d++++ ++sw + gnsfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll+
  LPERR03G04120.1 242 FLTKTFDLVADPATDGVVSWGRAGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANDGFLRGQRHLLK 326
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                       ikr++
  LPERR03G04120.1 327 MIKRRR 332
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.109.6E-932179IPR014710RmlC-like jelly roll fold
HamapMF_0315437.51113176IPR0274961,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, eukaryotes
SuperFamilySSF511821.49E-5314180IPR011051RmlC-like cupin domain
PfamPF030794.6E-6415168IPR004313Acireductone dioxygenase ARD family
SMARTSM004151.9E-57238331IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-36238331IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-34239331IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.7E-18242265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.9E-30242331IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-18280292IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340281305IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-18293305IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019509Biological ProcessL-methionine biosynthetic process from methylthioadenosine
GO:0051302Biological Processregulation of cell division
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005506Molecular Functioniron ion binding
GO:0010309Molecular Functionacireductone dioxygenase [iron(II)-requiring] activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MENQFQDGKE EVIEAWYMDD SEEDQRLPHH REPKEFIPLS KLSELGILSW RLNADDWEND  60
ENLKKIREAR GYSYMDICDV CPEKLPNYEV KIKNFFEEHL HTDEEIRYCL EGSGYFDVRD  120
QNDQWIRVAV KKGGMIVLPA GMYHRFTLDS DNYIKAMRLF VGEPVWTPYN RPHDHLPARL  180
LLTHWGFCMI SERSTLTKLS TEESKMEMIV PGIVKEEWSP EEGEEEAPRP MEGLHEVGTP  240
PFLTKTFDLV ADPATDGVVS WGRAGNSFVV WDPHVFAAVL LPRFFKHNNF SSFVRQLNTY  300
GFRKIDPDRW EFANDGFLRG QRHLLKMIKR RRPLSYLPAS QALGTCLEVG QFGMDEEIDR  360
LKRDKNILLA EVVKLRHEQQ STKADMRAME ERLQNAEQKQ VQMMGFLARA MQNPDFFHQL  420
IQHQDKMKGL EDTFSKKRTR SIDIVPFLRP EEVSQSDQLE STFPFDPRPF AELNVEPPKS  480
ELENLALNIQ GLGKGKQDVK LTRNQASVET ELTDDFWEEL LNEGARDETG TPELERRRPR  540
YVDALAQRLG YLSNNSQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vr3_A8e-771218013181Acireductone dioxygenase
5i8s_A6e-771218011691,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i8t_A6e-771218011691,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i8y_A6e-771218011691,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i91_A6e-771218011691,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i93_A6e-771218011691,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324330LKMIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G04120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057290.0AC105729.2 Oryza sativa Japonica Group chromosome 3 clone OJ1607A12, complete sequence.
GenBankAK0668440.0AK066844.1 Oryza sativa Japonica Group cDNA clone:J013088J01, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY3444890.0AY344489.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661780.20.0PREDICTED: heat stress transcription factor A-2c-like
SwissprotQ8H7Y60.0HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A0D9VPV20.0A0A0D9VPV2_9ORYZ; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
STRINGLPERR03G04120.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP285522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-96heat shock transcription factor A6B