PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G03690.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | E2F/DP | ||||||||
Protein Properties | Length: 287aa MW: 31959.1 Da PI: 7.2163 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 66.7 | 3.1e-21 | 56 | 116 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr++++k ++ek+e+ g++t+ne ++ d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg LPERR03G03690.3 56 GRGLRQFSMK---VCEKVESkGRTTYNE--QQY---DEKNIRRRVYDALNVLMAMEIISK-DKKEIQWKG 116 689*******...*****999******9..566...8899********************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.7E-10 | 50 | 79 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.6E-25 | 54 | 116 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 4.6E-19 | 57 | 116 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.54E-16 | 57 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.6E-22 | 80 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 7.02E-40 | 121 | 224 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 9.68E-42 | 123 | 244 | No hit | No description |
SMART | SM01138 | 1.4E-79 | 123 | 285 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 9.9E-42 | 123 | 258 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MAEASAAAGA GTPASENTFL RLNDLDIHGD DAPSSQAPTS KKKKRGARAV GPDKGGRGLR 60 QFSMKVCEKV ESKGRTTYNE QQYDEKNIRR RVYDALNVLM AMEIISKDKK EIQWKGLPRT 120 SINEIEDLQK ELVGLKSRIE KKNAYLQELQ DQFVGMQKLI QRNEQLYGSG NIPSSGVALP 180 FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDSYV LKAMSSCGEE QNDDIHDLIP 240 NGGESSSMPN IYRQQMQQPA RATNGTARLP GSPPIPGILK GRVKHEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 5e-28 | 48 | 121 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G03690.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY224589 | 0.0 | AY224589.1 Oryza sativa (japonica cultivar-group) isolate 31182 E2F dimerization factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651049.1 | 0.0 | PREDICTED: transcription factor-like protein DPB | ||||
Refseq | XP_015628001.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-117 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A0D9VPN6 | 0.0 | A0A0D9VPN6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G03690.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-118 | Transcription factor DP |