PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G03460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 19983.4 Da PI: 6.3292 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.6 | 2.5e-39 | 14 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkCa++Cv+apyf+ae+ +++fa++hk+FGasn kll+++++++r++++++++yeA+ar+rdPvyG+v++i++lqqql++l+++ LPERR03G03460.1 14 PCGACKFLRRKCAAECVFAPYFCAEDgAAQFAAIHKVFGASNAAKLLQHVDPSDRSEVAATVTYEAQARLRDPVYGCVAHIFALQQQLATLQVQ 107 7***********************9989****************************************************************** PP DUF260 94 lallkee 100 +a++k++ LPERR03G03460.1 108 VAQAKTQ 114 **99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.206 | 13 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-37 | 14 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MASTGGVGGV AGSPCGACKF LRRKCAAECV FAPYFCAEDG AAQFAAIHKV FGASNAAKLL 60 QHVDPSDRSE VAATVTYEAQ ARLRDPVYGC VAHIFALQQQ LATLQVQVAQ AKTQVAQTLA 120 AAGMMTAAGT NPLLQQMHQQ QQAWQMEHDQ SMTSTQSSGC YSAPRSDGST SLQDMYCFGE 180 QEEGSYSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-34 | 11 | 115 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-34 | 11 | 115 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G03460.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB200235 | 0.0 | AB200235.1 Oryza sativa Japonica Group CRLL1 mRNA for LOB domain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649405.1 | 1e-115 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9M2J7 | 2e-52 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A0D9VPK8 | 1e-135 | A0A0D9VPK8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G03460.1 | 1e-136 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10262 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 4e-39 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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