PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G02450.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 315aa    MW: 35020.4 Da    PI: 6.8018
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G02450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1583.8e-49131393128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPt+eel+++yL++ v gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s+ 
  LPERR03G02450.1  13 PGFRFHPTEEELLDFYLARVVLGKKLQF-DIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGNGGRPNRTTERGFWKATGSDRAIRSSg 105
                      9**************************9.99***************888999****************************************97 PP

              NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++glkktLvfy+grap+g+ktdWvm+eyrl
  LPERR03G02450.1 106 dPKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 139
                      66778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-584164IPR003441NAC domain
PROSITE profilePS5100555.46211164IPR003441NAC domain
PfamPF023657.8E-2513139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MATVAMELEQ DLPGFRFHPT EEELLDFYLA RVVLGKKLQF DIIGTLNIYR HDPWDLPGMA  60
KIGEREWYFF VPRDRKAGNG GRPNRTTERG FWKATGSDRA IRSSGDPKRV IGLKKTLVFY  120
QGRAPRGTKT DWVMNEYRLP DFAAGRAAPP FPKEDMVLCK IYRKATPLKE LEQRASAMEE  180
MQRRSSHGDH TNIASIVHDA SASTGDDYFS SDDVHDSGFL IPSSSSSAAA AAAPSDSSKN  240
GGAPREAKKE EEADVTVTVA SATSAASLSG LQLPSLQLPA NHGVMDWLQD PFLTQLRSPW  300
QDQHCLSPYA HLLYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-49716410168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G02450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070900.0AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690517.10.0PREDICTED: NAC domain-containing protein 67 isoform X1
SwissprotQ10S650.0NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0D9VP760.0A0A0D9VP76_9ORYZ; Uncharacterized protein
STRINGLPERR03G02450.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-86NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]