PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G02280.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Nin-like

Protein Properties

Length: 965aa MW: 107342 Da PI: 5.7086

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G02280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.4	2.9e-28	593	643	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+dl+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ LPERR03G02280.1 593 EKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 643 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.018	582	663	IPR003035	RWP-RK domain
Pfam	PF02042	7.1E-26	595	643	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	3.0E-22	816	896	No hit	No description
SuperFamily	SSF54277	8.5E-20	817	900	No hit	No description
PROSITE profile	PS51745	20.117	819	902	IPR000270	PB1 domain
SMART	SM00666	7.6E-20	819	902	IPR000270	PB1 domain
CDD	cd06407	5.31E-37	820	897	No hit	No description
Pfam	PF00564	3.5E-14	820	899	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
MEQKPPATAA AARDEDGLLA GDLDLMEEFL DLADFWHHPA GGASSPTTAT PFSPLFDIGS 60 SLTTLTPPPQ LAAAGEDDEA EMPWTIQTPA TAAEEPTVKE RLRRALDRMA ARRGGGGGDG 120 DGELLLQVWV PTRIGDRQVL TTCGQPFWLD RRNSRLASYR TVSMKYQFSA DETARAGLGL 180 PGRVFVGRVP EWTPDVRYFS TEEYPRVQHA QFFDIRGSVA LPVFEPRSRA CLGVVELVLT 240 TQKINYSAEI ENICDALKEV DLRSSDVSSD PRSKVVDASY QAIVPEIMDV LRAVCDTHNL 300 PLAQTWIPCI FQSKSGTRHS DEKYNYCVST VDEACYVRDR SVLGFHQACS EHHLFRGEGV 360 VGRAFGTNEP CFSPDITAYG KTQYPLSHHA KLFSLRAAVA IRLRSVRTGS LDFVLEFFLP 420 LKCIKTEEQR DMLNSLSNTI QQVCYTLRVV TAKELVDDER YEVSQPTRPE FYAKSVHENL 480 DELCSGINVP GRTASVEASE EVSSWIASLV DAQNKGAKGE IDVDLPFEFS KQDDEGFSVT 540 AGWHTSPVIA PEGSIFSGFK KDEDYDVKEN TCSSDPSHSN SDKAVEKRRT KTEKTVSLQD 600 LRKHFAGSLK EAAKNLGVCP TTLKRICRQH GINRWPSRKI KKVGHSLKKL QMVIDSVHGP 660 DGTVQLSSLY ENFTKTTWSE RELQGDVNFP ASEQNFQLEP SVPDRPCEGR FTSHTSGSNS 720 LSPSCSQSSN SSLGCSSVPK PHQQHGSAPQ LAVKQEISMD ENHCSTLIKS TSHAEADLQM 780 FVEERPATLF RSQSQVLLSE HIPTENILNL NVQKATSDSL KIKAIYREER CIFRLQPSWG 840 FQKLKEEIVK RFGIAQDTHV DLKYLDDESE WVLLTCEADL LECIDVYKSA TLHLVKLVCL 900 DSGIAALSVS SPHLQVKSAD VTLSCKPRWW NTQAPYLDTR LRCNPMDLPA DVAVELRCVP 960 ESERK

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

MEQKPPATAA AARDEDGLLA GDLDLMEEFL DLADFWHHPA GGASSPTTAT PFSPLFDIGS  60
SLTTLTPPPQ LAAAGEDDEA EMPWTIQTPA TAAEEPTVKE RLRRALDRMA ARRGGGGGDG  120
DGELLLQVWV PTRIGDRQVL TTCGQPFWLD RRNSRLASYR TVSMKYQFSA DETARAGLGL  180
PGRVFVGRVP EWTPDVRYFS TEEYPRVQHA QFFDIRGSVA LPVFEPRSRA CLGVVELVLT  240
TQKINYSAEI ENICDALKEV DLRSSDVSSD PRSKVVDASY QAIVPEIMDV LRAVCDTHNL  300
PLAQTWIPCI FQSKSGTRHS DEKYNYCVST VDEACYVRDR SVLGFHQACS EHHLFRGEGV  360
VGRAFGTNEP CFSPDITAYG KTQYPLSHHA KLFSLRAAVA IRLRSVRTGS LDFVLEFFLP  420
LKCIKTEEQR DMLNSLSNTI QQVCYTLRVV TAKELVDDER YEVSQPTRPE FYAKSVHENL  480
DELCSGINVP GRTASVEASE EVSSWIASLV DAQNKGAKGE IDVDLPFEFS KQDDEGFSVT  540
AGWHTSPVIA PEGSIFSGFK KDEDYDVKEN TCSSDPSHSN SDKAVEKRRT KTEKTVSLQD  600
LRKHFAGSLK EAAKNLGVCP TTLKRICRQH GINRWPSRKI KKVGHSLKKL QMVIDSVHGP  660
DGTVQLSSLY ENFTKTTWSE RELQGDVNFP ASEQNFQLEP SVPDRPCEGR FTSHTSGSNS  720
LSPSCSQSSN SSLGCSSVPK PHQQHGSAPQ LAVKQEISMD ENHCSTLIKS TSHAEADLQM  780
FVEERPATLF RSQSQVLLSE HIPTENILNL NVQKATSDSL KIKAIYREER CIFRLQPSWG  840
FQKLKEEIVK RFGIAQDTHV DLKYLDDESE WVLLTCEADL LECIDVYKSA TLHLVKLVCL  900
DSGIAALSVS SPHLQVKSAD VTLSCKPRWW NTQAPYLDTR LRCNPMDLPA DVAVELRCVP  960
ESERK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G02280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100046	0.0	AK100046.1 Oryza sativa Japonica Group cDNA clone:J013153P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629744.1	0.0	protein NLP1
Refseq	XP_015629745.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A0D9VP53	0.0	A0A0D9VP53_9ORYZ; Uncharacterized protein
STRING	LPERR03G02280.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]