PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G02180.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 378aa    MW: 40998.9 Da    PI: 7.9952
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G02180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.2e-322073255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  LPERR03G02180.1 20 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 73
                     8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-311676IPR009057Homeodomain-like
PROSITE profilePS5129412.6531676IPR017930Myb domain
SuperFamilySSF466896.63E-161875IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-242073IPR006447Myb domain, plants
PfamPF002497.3E-102172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVAGRERNGG VRQYNRSKVP RLRWTPDLHH CFVHAIHKLG GQDKATPKRV LQLMGVGGLT  60
ISHVKSHLQM YRNMRNDLGM QGGIQVQQVD QEHTYGGGVE VWTDMQQCDH ECDVPCCSCQ  120
HSPKPRKEPL LHLQLKSSMN IDEAGTRARV APNVHSTDVV VAAATASSET EDDDASANPR  180
SQQQQQQLIR NQAGIYSERQ EYRSSLPSKT ASLQCYYVHS TQTTTMHQMA RGIKQQAMPI  240
AAAAGDGGRR QCYSGHCYNS SRFKFLGFVV TSAPHHSHPL PACCRDEHHP FQVGTFPPLR  300
AMAPTASCTG GGRSMFEPPA AVDGEHDADC SLSLSLALDT RCGGGGGGSS SLVSSTTTMT  360
SSSASRISLD LSLSTLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G02180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689106e-82BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds.
GenBankHQ8587026e-82HQ858702.1 Zea mays clone UT1158 G2-like transcription factor mRNA, partial cds.
GenBankKJ7268136e-82KJ726813.1 Zea mays clone pUT3230 G2-like transcription factor (GLK48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880094.11e-124uncharacterized protein LOC4331498 isoform X1
TrEMBLA0A0D9VP350.0A0A0D9VP35_9ORYZ; Uncharacterized protein
STRINGLPERR03G02180.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.15e-28G2-like family protein