PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G01710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TALE | ||||||||
Protein Properties | Length: 552aa MW: 58892.8 Da PI: 6.9918 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.4 | 5.8e-09 | 320 | 357 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + LPERR03G01710.1 320 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 357 664459******************************88 PP | |||||||
2 | BELL | 85.4 | 6.7e-28 | 183 | 252 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elq+ k kL +leeVd+rY++y+eq++ v + Feavag +a+ Yt++A ++iSrhFr+L+d +++q+ LPERR03G01710.1 183 LELQRLKDKLYIMLEEVDRRYRRYCEQMRSVSGGFEAVAGERAAAAYTAVAARTISRHFRSLRDGVVSQL 252 58999**************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.8E-36 | 128 | 250 | IPR006563 | POX domain |
Pfam | PF07526 | 5.6E-37 | 134 | 248 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.985 | 298 | 361 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.6E-9 | 301 | 365 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.33E-12 | 301 | 362 | No hit | No description |
SuperFamily | SSF46689 | 1.8E-17 | 302 | 368 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-28 | 304 | 367 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.1E-18 | 318 | 357 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MAHDPSLGFA DYFSAADGAT ASSVTTLMPT MVDDTAPELY GLQSGIELLG MIPGATTKLA 60 DAANDGGAAT MRFVAEHHHH HNHHNRLSQA PLSLSLSQIA GAARQHPHLA PTAGAAPWMQ 120 HDAPPTPHGV AWQLRGSRFL VPAQQVLQEF CSLPVDTTKR TKPPTQQEDG SSASAQIQAM 180 EALELQRLKD KLYIMLEEVD RRYRRYCEQM RSVSGGFEAV AGERAAAAYT AVAARTISRH 240 FRSLRDGVVS QLQAVRKALG EKDVRIAGMT RGETPRLKVI DQCVRHHKSL GGAGGMDGHP 300 WRPQRGLPER AVTILRAWLF EHFLHPYPSD VDKHILARQT GLSRSQVSNW FINARVRLWK 360 PMVEEMYVEE MKDGQDAGNG STVSGGQGIS PNTKQAAVGD GDGDGEQKPT TAQLRHHDAT 420 GSLASVVNVD VVARDNFGIM GHLDFDAYGD NQHNQHAAFV GGGGGGVSLT LGLQHHGSRG 480 VGDGGGVNIA FGAPASAAAH GGAGFVYPGE QMVDVVQFMD GGGGGGDASH GGQEQRYRSL 540 SAGFHLLRDL AG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 2e-17 | 307 | 365 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-17 | 307 | 365 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G01710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121207 | 0.0 | AK121207.1 Oryza sativa Japonica Group cDNA clone:J023088C15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628192.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | A0A0D9VNW1 | 0.0 | A0A0D9VNW1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G01710.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 5e-80 | TALE family protein |