PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G01560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 318aa    MW: 34446.7 Da    PI: 9.8587
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G01560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.21.2e-3144148199
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  
  LPERR03G01560.1  44 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaA 137
                      89****************************66677899************************************************96558889 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++++++ ++r+
  LPERR03G01560.1 138 RGRFFIDWRRR 148
                      99999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-4038148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-2941144IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-2442129No hitNo description
SMARTSM010191.5E-2044149IPR003340B3 DNA binding domain
PfamPF023622.4E-2844148IPR003340B3 DNA binding domain
PROSITE profilePS5086314.53644149IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEFITPIVRP ATAMAAGGGG GRGVEEESDG RKLAPEVVEK EHMFDKVVTP SDVGKLNRLV  60
IPKQHAEKYF PLDSSSNEKG LLLSFEDRTG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKR  120
LDAGDTVSFG RGVGEAARGR FFIDWRRRPD VVAALAPPSH RFPSSVSVPF APWSAAAAAA  180
AHYYHGGGGG GGGSRFLQLP PSTAIYDHRR HGQAVGYDDY AAAAASRQVV FYRPVTHHQQ  240
QQPAVVLESV PVRMAAAGHG EPSAPSKRVR LFGVNLDCAN SEEDAKTAPP PLLQLPSPPS  300
SSSTSSSGKV RCSLNLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-65371511116B3 domain-containing transcription factor NGA1
5os9_B8e-65371511116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G01560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175821e-130AC217582.2 Oryza punctata clone OP__Ba0071K23, complete sequence.
GenBankAC2260771e-130AC226077.2 Oryza minuta clone OM__Ba0121K01, complete sequence.
GenBankAC2365461e-130AC236546.1 Oryza minuta clone OM__Ba0198F03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628752.11e-144B3 domain-containing protein Os03g0120900
SwissprotQ8LMR91e-145Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0D9VNT70.0A0A0D9VNT7_9ORYZ; Uncharacterized protein
STRINGLPERR03G01560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-73B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]