PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G01480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 651aa    MW: 72833.5 Da    PI: 6.7634
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G01480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.69.4e-5761331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v
  LPERR03G01480.1   6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKV 98 
                      79****************************.99**************95334455777************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s ++++vg+kktLv+y+grap+g++tdWvmheyrl
  LPERR03G01480.1  99 NS-QRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                      **.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-634156IPR003441NAC domain
PROSITE profilePS5100561.5476156IPR003441NAC domain
PfamPF023651.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECEI DTGLQDAYAL CRVFKKTAPG PKIIEHYGVV HHHVEQPQWM  180
TSSVDRSPTL EVSCDGRADD FESSSFSFPT ETPMESMHGG FGMQMSAPHE DGKWMQFLSE  240
DAFNTTNPFF TNPVAANFSC LPSKVDVALE CARLQHRLTL PPLGVEDFPQ DVSLDTKTGI  300
LRSNPNEVDI LQEFLSVATA SQELINGSSS YPEMWLGAST SSASYVNELS SLVEMGGAGT  360
SNHDESARLQ IEITDMEVFK NEKKRVENLR GVKLVNNDLG EIVVEGDESN PTEAIVAQYT  420
IKDTVDNSGE AGHRMTDPTD VGIIDTAPIF SQSQPDDFAV GFDDVNPNAS FDLYEKVDVS  480
HGLFVSRVGA AKTFFHRIEP SKKIRFHSNP AATAVSKATT EKFHFPVTTK VISGRVSIFS  540
KLKALIRDKF LMRRPSSNYQ RLGSKETTVA ELLQIVSLLL APKQITGPTE QVLVKKKAKE  600
VMKKPGWGRD GGNKLWLPIP KGKGISSMFL SGKWTFLTSA LAISTPAECD H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-55116212171NO APICAL MERISTEM PROTEIN
1ut4_B4e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_A4e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_B4e-55116212171NO APICAL MERISTEM PROTEIN
3swm_A5e-55116215174NAC domain-containing protein 19
3swm_B5e-55116215174NAC domain-containing protein 19
3swm_C5e-55116215174NAC domain-containing protein 19
3swm_D5e-55116215174NAC domain-containing protein 19
3swp_A5e-55116215174NAC domain-containing protein 19
3swp_B5e-55116215174NAC domain-containing protein 19
3swp_C5e-55116215174NAC domain-containing protein 19
3swp_D5e-55116215174NAC domain-containing protein 19
4dul_A4e-55116212171NAC domain-containing protein 19
4dul_B4e-55116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G01480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2658210.0AB265821.1 Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628513.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628514.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628515.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628518.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628520.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879975.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879976.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879977.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879978.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879979.10.0NAC domain-containing protein 45 isoform X1
TrEMBLA0A0D9VNS90.0A0A0D9VNS9_9ORYZ; Uncharacterized protein
STRINGLPERR03G01480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-128NAC domain containing protein 28