PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G00950.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 1616aa    MW: 177678 Da    PI: 5.8112
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G00950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.3e-0715951616527
                       --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                        C+ f+++G+C+ G++C++ H++
  LPERR03G00950.1 1595 VCK-FHENGYCRKGASCNYLHPQ 1616
                       588.9999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.75E-8107158IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-8108165IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.6E-6113159IPR001965Zinc finger, PHD-type
CDDcd155689.88E-20113158No hitNo description
PROSITE patternPS013590114174IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.0012197271IPR019835SWIB domain
SuperFamilySSF475922.83E-14219268IPR003121SWIB/MDM2 domain
PfamPF022012.9E-13220266IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.108.2E-18220273IPR003121SWIB/MDM2 domain
PROSITE profilePS5136032.568327459IPR004343Plus-3 domain
SMARTSM007199.9E-44327436IPR004343Plus-3 domain
SuperFamilySSF1590429.68E-34327453IPR004343Plus-3 domain
PfamPF031261.0E-25332435IPR004343Plus-3 domain
SuperFamilySSF552774.45E-15584644IPR003169GYF domain
PROSITE profilePS5082914.435591643IPR003169GYF domain
SMARTSM004441.4E-12592645IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.5E-14593644IPR003169GYF domain
PfamPF022134.5E-9594633IPR003169GYF domain
PROSITE profilePS5010314.04215901616IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.65E-515921615IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-415921616IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-415951616IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1616 aa     Download sequence    Send to blast
MVGAAGAAAE MLSPAEADWP PELRLPQPPP PPQSQPAIGM DDSQFLGSIM ALPAQTLPHH  60
PQATAAAAEA QAVVGVKRRR GRPPKKKDGA GTAAVVPAAA KAARGKVDEE EVVCFICFDG  120
GNLVVCDRRG CPKVYHPACI KRDEAFFQSR SKWNCGWHIC SSCEKAVHYM CYTCTYSLCK  180
VCIKQGKFFS VRGTKGFCDT CYTTILLIES KDEGGSKVLL LEYIKQNNLR DPQRKSQIIC  240
DSRLHRLFRK TRVAHFEMLK LLEMHFLVSE PSTVNDDNQG VVNPNSAQID HASGHNDMAA  300
KISPDRRRRM HRKMERESQA NPEDYAAIDM HNISLIYLRR SLMEDLIDDP TFSDKISGAF  360
VRIRISGLGQ KQDMYRLVKV VGTHNVSDKY SIGKKTTNLA LEIMNLNKKE IITMDTVSNQ  420
DFTEEECKRL RQSMKYNLIS RLKVGDIQEK AKVFQFVRVN DLINTPEERT RRINEVLDVH  480
VDSHMDPDYE STEEFGNVER NINWSRSDTF ASPIKVKHPN TSQKNYDATH HPRNLSKQNT  540
VRKSGAARNF ENSHSSIGMD VRNSGTNVKS TMCGTAPLSS SGVTVSNEEP EKVWHYKDPS  600
GNVQGPFTLL QLSKWTSYFP RDMRVWLTFE SEERSLLLTE VLSKQPKDFG QPASVTTSSK  660
STLADTGRNR NNQIVDLNKA PSPVGYSMLN SSETTAQSTK HSVLERESVN SLDDRLSLST  720
DSVPQKDTNT SNSQAMFRTK HSSSLPSPGS PHQQPDLHHD EVHGGHSGEW NNQHNSSERW  780
SPAMPQTSSS AQSDLESYHN QVHHYALSSQ VQHDSKNSLQ ARSGKNLNSR QDFSQKLPGQ  840
RITRDVPSPV FAWSPSESRT ASSQYEGSCL SSTTNLCSHD ELHSSIASAK AKSFAPATPV  900
EDRGSSSPSG MLSHSERAPI RSPQSAPSVS ASDTCKMEII NQQKTLEADI SNTSVNQSPQ  960
SKILPESSPD NEDTVREYRS PPPISESKGL SPQSRTTPES SPDNQDNQDT EHEDRSPLPI  1020
SESKVLYPQS RTPESSPDKE ATERPPPISE SKELYPQSRA TPISSPDKQD TECEYPSPPP  1080
IPESKELSPQ SRTIPESSPD NQDTEREYPS PPPIPENKEL SPHSKVLPES SPDNKDAEPE  1140
CPSPTPTPTP ESKEPSPQSK ILPEPSPDDQ DIKHEYPSPT VICKSKEVSP QSKILSECSL  1200
DNQDIEHEYP DPTLISESKE LAVDLSGSVS LAPEKIASDV GEHSSLAFMF SKSSPAGDGA  1260
LKSVSDIEKT LFDDEDSNIK EELYVESTDV IRGDMVVNPA SGVESIDMSE NLLESLIEQS  1320
CGSFYMDGAT ALENFLSGST KEEPQCSSPI ALSTCSSPIA LSPWGEPGYY EGDSVGSLWG  1380
IQDNDPINDI WPLSTQTPAL HYSSGSTAHF IDEVTVTHGD DGIVPRSTMP GEKVELPNSG  1440
VCMDWRLVEQ VNPEANDASV STINGSTGLV NSQPSANDGS NVDTARNTNH NTNLPLKHET  1500
AVPLSTGSGE ASRKQGCTTD MNVATSGEAL GGTKNWNRSA GNANRGSQRN HHRDRYSQIS  1560
ESWLLSSNYS RGRSDGFGTG GSSRSTPRGQ TQRGVCKFHE NGYCRKGASC NYLHPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2naa_A1e-12109180472Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G00950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2328940.0AC232894.1 Oryza officinalis clone OO__Ba0087M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLA0A0D9VNK00.0A0A0D9VNK0_9ORYZ; Uncharacterized protein
STRINGLPERR03G00950.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-79DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding