PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G00700.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 363aa    MW: 40806.7 Da    PI: 6.7164
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G00700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.6e-49171561128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhP+deelv++yL++k +++   +++++++ evd++ +ePwdLp+ +k + +ewyfFs rdkkyatg+r+nratk+gyWkatgkdk++
  LPERR03G00700.1  17 LPPGFRFHPSDEELVCYYLRNKQQSNLqtTTAATMLVEVDLHACEPWDLPEVAKLSADEWYFFSYRDKKYATGSRRNRATKQGYWKATGKDKAI 110
                      79********************88876434455669**************87788899************************************ PP

              NAM  93 lsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++          ++++ g +ktLvfy grap+g+k++Wvmhe+rl
  LPERR03G00700.1 111 HEHdagsggcsrkNRAVAGARKTLVFYFGRAPNGRKSSWVMHEFRL 156
                      **988888877666666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-564183IPR003441NAC domain
PROSITE profilePS5100554.79517183IPR003441NAC domain
PfamPF023656.7E-2718156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNNSYDMMGL RAIESRLPPG FRFHPSDEEL VCYYLRNKQQ SNLQTTTAAT MLVEVDLHAC  60
EPWDLPEVAK LSADEWYFFS YRDKKYATGS RRNRATKQGY WKATGKDKAI HEHDAGSGGC  120
SRKNRAVAGA RKTLVFYFGR APNGRKSSWV MHEFRLLLPH PKPKFHNMQE EVEDWVLCRV  180
FHKGNNSNGG QACQSSSGVI TATTTPRSSS SAPTTIHHLQ LHACSLPQQK QLQILADDNN  240
KLKGLEESLM ISSSPATIIM SDQNRFSSSI MHHDHHDNQQ RVLLDNERII ISSSSRCDDQ  300
LGSNEEQQQL LLDLSFLQAP AFLELDDHSP GGGGGVEIIT DMENLLETSG VLQGADSYYM  360
QLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-441718317165NO APICAL MERISTEM PROTEIN
1ut4_B7e-441718317165NO APICAL MERISTEM PROTEIN
1ut7_A7e-441718317165NO APICAL MERISTEM PROTEIN
1ut7_B7e-441718317165NO APICAL MERISTEM PROTEIN
3swm_A7e-441718320168NAC domain-containing protein 19
3swm_B7e-441718320168NAC domain-containing protein 19
3swm_C7e-441718320168NAC domain-containing protein 19
3swm_D7e-441718320168NAC domain-containing protein 19
3swp_A7e-441718320168NAC domain-containing protein 19
3swp_B7e-441718320168NAC domain-containing protein 19
3swp_C7e-441718320168NAC domain-containing protein 19
3swp_D7e-441718320168NAC domain-containing protein 19
4dul_A7e-441718317165NAC domain-containing protein 19
4dul_B7e-441718317165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G00700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650960.11e-124PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE63e-59NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0D9VNG40.0A0A0D9VNG4_9ORYZ; Uncharacterized protein
STRINGLPERR03G00700.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169171212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-69NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]