PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G00700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 40806.7 Da PI: 6.7164 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.3 | 6.6e-49 | 17 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+deelv++yL++k +++ +++++++ evd++ +ePwdLp+ +k + +ewyfFs rdkkyatg+r+nratk+gyWkatgkdk++ LPERR03G00700.1 17 LPPGFRFHPSDEELVCYYLRNKQQSNLqtTTAATMLVEVDLHACEPWDLPEVAKLSADEWYFFSYRDKKYATGSRRNRATKQGYWKATGKDKAI 110 79********************88876434455669**************87788899************************************ PP NAM 93 lsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++++ g +ktLvfy grap+g+k++Wvmhe+rl LPERR03G00700.1 111 HEHdagsggcsrkNRAVAGARKTLVFYFGRAPNGRKSSWVMHEFRL 156 **988888877666666***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-56 | 4 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.795 | 17 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-27 | 18 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MNNSYDMMGL RAIESRLPPG FRFHPSDEEL VCYYLRNKQQ SNLQTTTAAT MLVEVDLHAC 60 EPWDLPEVAK LSADEWYFFS YRDKKYATGS RRNRATKQGY WKATGKDKAI HEHDAGSGGC 120 SRKNRAVAGA RKTLVFYFGR APNGRKSSWV MHEFRLLLPH PKPKFHNMQE EVEDWVLCRV 180 FHKGNNSNGG QACQSSSGVI TATTTPRSSS SAPTTIHHLQ LHACSLPQQK QLQILADDNN 240 KLKGLEESLM ISSSPATIIM SDQNRFSSSI MHHDHHDNQQ RVLLDNERII ISSSSRCDDQ 300 LGSNEEQQQL LLDLSFLQAP AFLELDDHSP GGGGGVEIIT DMENLLETSG VLQGADSYYM 360 QLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-44 | 17 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-44 | 17 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-44 | 17 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-44 | 17 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-44 | 17 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-44 | 17 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-44 | 17 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-44 | 17 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-44 | 17 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-44 | 17 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-44 | 17 | 183 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-44 | 17 | 183 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-44 | 17 | 183 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-44 | 17 | 183 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G00700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650960.1 | 1e-124 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 3e-59 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0D9VNG4 | 0.0 | A0A0D9VNG4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G00700.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16917 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-69 | NAC domain containing protein 74 |