PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G31180.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 634aa    MW: 70100.2 Da    PI: 4.2735
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G31180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.33.1e-49151511128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyW 83 
                      l+pGfrFhPtdeelv++yL++++ g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k +          g+r+nrat +gyW
  LPERR02G31180.1  15 LAPGFRFHPTDEELVSYYLRRRILGHRLRI-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVTgagaggrggPGNRTNRATPRGYW 107
                      579***************************.99***************5448999999***********99777777665567*********** PP

              NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+tgkd++v++ +g+lvg+kktLvf++grapkge+t+Wvmheyrl
  LPERR02G31180.1 108 KTTGKDRDVHH-RGKLVGMKKTLVFHSGRAPKGERTNWVMHEYRL 151
                      ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-5510169IPR003441NAC domain
PROSITE profilePS5100555.44415169IPR003441NAC domain
PfamPF023655.6E-2717151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MSLSPPDSSA AAVPLAPGFR FHPTDEELVS YYLRRRILGH RLRIDAIAEV DLYRLEPWDL  60
PSLSRIRSRD AQWYFFARLD RKVTGAGAGG RGGPGNRTNR ATPRGYWKTT GKDRDVHHRG  120
KLVGMKKTLV FHSGRAPKGE RTNWVMHEYR LLDANGAQDL HVVCRIFQKM GSGPQNGAQY  180
GAPYLEEDWE EEDDAIENAP ASGASTEIAA VADTADEESN EDDEKFSFKA NELLEETQED  240
INQPEMTPVK AQDLRETNGS GYGDDVFSLD EILQEPENVC KNEEQNAIDD NFTIEELSGY  300
PRQDDVYVGE NGPVNWVGPS NGDNANWPLR AYSTQNHVNG TLSADGFFDT GNDTSSYSGQ  360
QQFCPSDNQN MYLQDDGMTA SRQVDDSMPF FDASSNHKWV DGKDDYVNLN DLLYQPTENQ  420
SLFDVGDDLM AYFDANEDDF KLDIMGTEGN SELPDMSNFV QKDDNKEKFT LDGMSNSTLY  480
GASSSGSHGN MYPDTAVPDM PMDDTLDKSF GKRLASMLGS IPAPPAMASE LPPSTGKSLG  540
VVNPNSSIHV TAGIIQLGGL TFTGSTEHLQ KNGDFNLLFS FTVEGDVSSK SIDFEPVTRM  600
STAPIVLRSG MYLFFVSAMI LMLSYKVGLC IYSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-4311691168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G31180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021730.0AK102173.1 Oryza sativa Japonica Group cDNA clone:J033086I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624689.10.0NAC domain-containing protein 78 isoform X1
TrEMBLA0A0D9VMU50.0A0A0D9VMU5_9ORYZ; Uncharacterized protein
STRINGLPERR02G31180.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.14e-61NAC domain containing protein 2