PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G30520.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

G2-like

Protein Properties

Length: 708aa MW: 79130.8 Da PI: 6.4604

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G30520.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.4	4.3e-30	533	585	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFv+av++LGG kAtPk++ ++mkv++Lt++h+kSHLQkYR+ LPERR02G30520.1 533 KPRMRWTPELHERFVDAVNKLGG--KATPKAVQKVMKVESLTIYHIKSHLQKYRT 585 79*****************99..69*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11107	2.4E-40	1	213	No hit	No description
Pfam	PF11107	2.2E-6	217	315	No hit	No description
PROSITE profile	PS51294	12.376	530	588	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-16	530	586	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-28	532	586	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	533	585	IPR006447	Myb domain, plants
Pfam	PF00249	8.5E-11	535	584	IPR001005	SANT/Myb domain
Pfam	PF14379	6.6E-7	641	665	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MEELLGLVRG FVDVLVLAGG RTSSGAAATW RSGDIKKALQ WGLFFEEVFK NLCDNGQYDD 60 SARELDAALL QLTSNPNFPK GIEDIRSKTL STARELVVKH FLKTTSEENL GAVLEAVVEM 120 DIDDISASGR DVRQEYVQSM LDANLSSLMR VKNACDVGHP TSSDKLCEES LLMGNSQIVL 180 KELLKKLDSV LCISLAERGL NTLLKSMKRN SFYDAGSTLC TSATAQKTQI FENFILWKQW 240 RAKCLSYLLD ERTSRIMSGT NLIFNAPKEQ WMGLFEQLKV SADSCLVEVM YADLHQLLQG 300 TAQDDYQDKL LGLKEKDICE YARQSLESKP YILWLLPPVL TAAAMPPWSS LFGIYLIEID 360 KQFDGAASTD RKCDCRGYGI EQHQNFSSPS IKALSRLSSY NGNPSSLRMV YPKVSEQNSW 420 SQEPLPGQFV CPTSVDLFDQ QDVATFDQQI QDNIAASPNT NLAKQNEWFS SGTSLRYLES 480 SVCAGSVLKA VDATSTTPSN YSHYHAQKNT SYSPSFNELC SSNLTSSNIA PTKPRMRWTP 540 ELHERFVDAV NKLGGKATPK AVQKVMKVES LTIYHIKSHL QKYRTVHHRP ELTDGRGMET 600 CEGLRVQIGL QKQLHEQLEV PLFLFGTGKK KEQGFVHLAN IQRKLQLQVE EHSKYLAMMI 660 AKQSESLKQL GALPRSLDAP TQVLDYQDQE SCEGQTGHTD STEQKSGK

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MEELLGLVRG FVDVLVLAGG RTSSGAAATW RSGDIKKALQ WGLFFEEVFK NLCDNGQYDD  60
SARELDAALL QLTSNPNFPK GIEDIRSKTL STARELVVKH FLKTTSEENL GAVLEAVVEM  120
DIDDISASGR DVRQEYVQSM LDANLSSLMR VKNACDVGHP TSSDKLCEES LLMGNSQIVL  180
KELLKKLDSV LCISLAERGL NTLLKSMKRN SFYDAGSTLC TSATAQKTQI FENFILWKQW  240
RAKCLSYLLD ERTSRIMSGT NLIFNAPKEQ WMGLFEQLKV SADSCLVEVM YADLHQLLQG  300
TAQDDYQDKL LGLKEKDICE YARQSLESKP YILWLLPPVL TAAAMPPWSS LFGIYLIEID  360
KQFDGAASTD RKCDCRGYGI EQHQNFSSPS IKALSRLSSY NGNPSSLRMV YPKVSEQNSW  420
SQEPLPGQFV CPTSVDLFDQ QDVATFDQQI QDNIAASPNT NLAKQNEWFS SGTSLRYLES  480
SVCAGSVLKA VDATSTTPSN YSHYHAQKNT SYSPSFNELC SSNLTSSNIA PTKPRMRWTP  540
ELHERFVDAV NKLGGKATPK AVQKVMKVES LTIYHIKSHL QKYRTVHHRP ELTDGRGMET  600
CEGLRVQIGL QKQLHEQLEV PLFLFGTGKK KEQGFVHLAN IQRKLQLQVE EHSKYLAMMI  660
AKQSESLKQL GALPRSLDAP TQVLDYQDQE SCEGQTGHTD STEQKSGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	533	589	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	533	589	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	533	589	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	533	589	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	533	589	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	533	589	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	533	589	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	533	589	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G30520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066382	0.0	AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627299.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_015627301.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_015627302.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_025878774.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_025878775.1	0.0	uncharacterized protein LOC4331121
TrEMBL	A0A0D9VMJ7	0.0	A0A0D9VMJ7_9ORYZ; Uncharacterized protein
STRING	LPERR02G30520.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5494	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	2e-36	phosphate starvation response 1