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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | LPERR02G30060.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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| Family | bHLH | ||||||||
| Protein Properties | Length: 304aa MW: 34244.9 Da PI: 7.0047 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 51.4 | 2e-16 | 53 | 99 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn E+rRR+riN+++ L++l+P++ K +Ka++L A+eY+k+Lq
LPERR02G30060.1 53 VHNLSEKRRRSRINEKMKALQSLVPNS-----SKTDKASMLDDAIEYLKQLQ 99
6*************************8.....7******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.27E-20 | 46 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.4E-20 | 47 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 18.222 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 7.94E-16 | 52 | 103 | No hit | No description |
| Pfam | PF00010 | 5.0E-14 | 53 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 6.9E-19 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 304 aa Download sequence Send to blast |
MMDGRGQEHL DLMIMRQHAG MGCESEDALG GSSESEPTRP ARPRGKRSRA AEVHNLSEKR 60 RRSRINEKMK ALQSLVPNSS KTDKASMLDD AIEYLKQLQL QVQMLSMRNG LCLPPVNLSG 120 VPEHLPVQQM CAELDQNSTK ASNPSVVLQP MNQISGAHLR CEPANYGLRQ HKPLFLPGVP 180 NTTTPEPRFL VESSRSNLQS LPLLESAEMI YPHDTMLKHR LTSANESTAV PGTEMKSARQ 240 DTYMTGADRF DRYTLGRDQL QDMMEKNTAN VCRLESRQWG NGLMELWEER LNDELVIVSW 300 NHPA |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | LPERR02G30060.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015689350.1 | 1e-147 | PREDICTED: transcription factor PIL1-like | ||||
| TrEMBL | A0A0D9VMC8 | 0.0 | A0A0D9VMC8_9ORYZ; Uncharacterized protein | ||||
| STRING | LPERR02G30060.1 | 0.0 | (Leersia perrieri) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP3336 | 37 | 76 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36930.1 | 9e-35 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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