PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G28780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 370aa    MW: 40548.9 Da    PI: 4.5683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G28780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18123172255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G+r+++ +g+W+AeIrdp++     r++lg++ +aeeAa+a++a +++++g
  LPERR02G28780.1 123 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNSAEEAARAYDAEARRIRG 172
                      69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.83E-31123182No hitNo description
Gene3DG3DSA:3.30.730.108.5E-31123181IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-21123180IPR016177DNA-binding domain
PROSITE profilePS5103223.433123180IPR001471AP2/ERF domain
SMARTSM003802.1E-35123186IPR001471AP2/ERF domain
PfamPF008473.6E-11124172IPR001471AP2/ERF domain
PRINTSPR003672.9E-10124135IPR001471AP2/ERF domain
PRINTSPR003672.9E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MCGGAILHHL KAHPAAAGTG RRVTKELLWP EKKKARWGGG GRRHFGGFVE EEEEDFEADF  60
EEFEVDSGES DLEFGVEDDD DDVVEIKPPV VKRSFSRDGL STITTAGFDG PAAKSAKRKR  120
KNQFRGIRQR PWGKWAAEIR DPRKGVRVWL GTYNSAEEAA RAYDAEARRI RGKKAKVNFP  180
EAPTAAQKCR GGSTTAKAPK SSVEQKPTVK PAFSNLANTN AFVYQSADFT SNKPDNMPFV  240
PAMNSAVPIE DPIINSDQGS NSFGYSDLGW ENDTKTPDIT SIAPISTIAE VDESAFLASD  300
THNSVVPPIM DNSSVDLTDG LPDLEPYMRF LLDDGAGDSI DSLLNLDGSQ DVVSNMDLWS  360
FDDMPVSDFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-18122180160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-18123180563ATERF1
3gcc_A1e-18123180563ATERF1
5wx9_A2e-181231811473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G28780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0640270.0AK064027.1 Oryza sativa Japonica Group cDNA clone:001-125-B02, full insert sequence.
GenBankAK1037830.0AK103783.1 Oryza sativa Japonica Group cDNA clone:J033145H23, full insert sequence.
GenBankAK1196430.0AK119643.1 Oryza sativa Japonica Group cDNA clone:002-130-F11, full insert sequence.
GenBankEU8372550.0EU837255.1 Oryza sativa Japonica Group clone KCS057H03 EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648015.10.0PREDICTED: ethylene-responsive transcription factor 1
SwissprotQ6K7E60.0ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0D9VLV90.0A0A0D9VLV9_9ORYZ; Uncharacterized protein
STRINGLPERR02G28780.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-33related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]