PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G28780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 370aa MW: 40548.9 Da PI: 4.5683 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 123 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg++ +aeeAa+a++a +++++g LPERR02G28780.1 123 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNSAEEAARAYDAEARRIRG 172 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.83E-31 | 123 | 182 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.5E-31 | 123 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-21 | 123 | 180 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.433 | 123 | 180 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-35 | 123 | 186 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-11 | 124 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 124 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MCGGAILHHL KAHPAAAGTG RRVTKELLWP EKKKARWGGG GRRHFGGFVE EEEEDFEADF 60 EEFEVDSGES DLEFGVEDDD DDVVEIKPPV VKRSFSRDGL STITTAGFDG PAAKSAKRKR 120 KNQFRGIRQR PWGKWAAEIR DPRKGVRVWL GTYNSAEEAA RAYDAEARRI RGKKAKVNFP 180 EAPTAAQKCR GGSTTAKAPK SSVEQKPTVK PAFSNLANTN AFVYQSADFT SNKPDNMPFV 240 PAMNSAVPIE DPIINSDQGS NSFGYSDLGW ENDTKTPDIT SIAPISTIAE VDESAFLASD 300 THNSVVPPIM DNSSVDLTDG LPDLEPYMRF LLDDGAGDSI DSLLNLDGSQ DVVSNMDLWS 360 FDDMPVSDFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 122 | 180 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-18 | 123 | 180 | 5 | 63 | ATERF1 |
3gcc_A | 1e-18 | 123 | 180 | 5 | 63 | ATERF1 |
5wx9_A | 2e-18 | 123 | 181 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G28780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064027 | 0.0 | AK064027.1 Oryza sativa Japonica Group cDNA clone:001-125-B02, full insert sequence. | |||
GenBank | AK103783 | 0.0 | AK103783.1 Oryza sativa Japonica Group cDNA clone:J033145H23, full insert sequence. | |||
GenBank | AK119643 | 0.0 | AK119643.1 Oryza sativa Japonica Group cDNA clone:002-130-F11, full insert sequence. | |||
GenBank | EU837255 | 0.0 | EU837255.1 Oryza sativa Japonica Group clone KCS057H03 EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006648015.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1 | ||||
Swissprot | Q6K7E6 | 0.0 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A0D9VLV9 | 0.0 | A0A0D9VLV9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G28780.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 2e-33 | related to AP2 12 |