PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G28430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GRF | ||||||||
Protein Properties | Length: 398aa MW: 43598.3 Da PI: 7.8182 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.9 | 9.7e-25 | 94 | 137 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e LPERR02G28430.1 94 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 137 79***************************************998 PP | |||||||
2 | QLQ | 59.6 | 9.1e-21 | 22 | 57 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l+yKy+a++ P+P++L++++++ LPERR02G28430.1 22 PFTASQWQELEHQALIYKYMASGTPIPSDLILPLRR 57 9********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.4E-11 | 21 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.801 | 22 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.4E-15 | 22 | 55 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.573 | 94 | 138 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-20 | 95 | 137 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MMMMSGRPSG GGGGAGAVGR YPFTASQWQE LEHQALIYKY MASGTPIPSD LILPLRRSFL 60 LDSALATSPS LAFPPQPSLG WGCFGMGFGR KAEDPEPGRC RRTDGKKWRC SKEAYPDSKY 120 CEKHMHRGKN RSRKPVEMSL ATPPTPPPSN TSSAAASNAS AAATTTTSSP APPSYNHRTD 180 ASPYHQALYG GGGHYAAAAR APAATFHHAQ VSPFHLHLDT THPHPPPSYY SMDHKDQYAA 240 YGHAAKEIHG GGEHVFFSDG GNDRESHHNH HQWQFKQLGM QSKPNTTTLF PGAGYGGGNN 300 NSTAASPYPI DLSKEDDDEK ERRQQQQQHC FLLGADLRLE KPSEAQKPLR HFFDEWPHEK 360 SSKGSWMGLD GETQLSMSIP MATTDLPITT TSRYHNDD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G28430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647996.1 | 0.0 | PREDICTED: growth-regulating factor 1 | ||||
Swissprot | Q6AWY8 | 0.0 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | A0A0D9VLR5 | 0.0 | A0A0D9VLR5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G28430.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-51 | growth-regulating factor 5 |