PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G26970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 372aa MW: 40330.8 Da PI: 7.8957 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++l +++++ G g+W++ ++ g++R++k+c++rw +yl LPERR02G26970.1 14 KGPWTTEEDDKLMEYIQKNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E + ++++++ lG++ W++Ia++++ gRt++++k++w+++l LPERR02G26970.1 67 RGKFTSAEKDTILQLHAVLGNK-WSAIAKHLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.43 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.57E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.15E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.329 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MGRSPCCDEN GLKKGPWTTE EDDKLMEYIQ KNGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF TSAEKDTILQ LHAVLGNKWS AIAKHLPGRT DNEIKNYWNT HLKKDLIQKG 120 IDPTTHRPRT DFFAALPQLI ALANLRNLVG QMPWDDPAAS GLQQQQAEAA KFGYMHLQAL 180 LQPPPSTATS PKSGSIAGAM MAGDMEQMGA GLLSPPPMSS LSPLPSPMST SSLSPLPSPM 240 SSTVALSPLP SSSFFNGGHG SFVAGQLPSI HQMHGSSLFN QTPAAIINNS NHNPDYAPNN 300 GATKTTTTLL LSEDSLPPLT DYPAISNLGD VCSATSCDGN ITELPVLSDA LFDELMRDYN 360 HKFWLKGQAT WA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G26970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005012 | 1e-120 | AP005012.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0627E03. | |||
GenBank | AP014958 | 1e-120 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623220.1 | 1e-178 | transcription factor MYB41 | ||||
TrEMBL | A0A0D9VL69 | 0.0 | A0A0D9VL69_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G26970.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1126 | 37 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 2e-92 | myb domain protein 93 |