PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G26470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | Nin-like | ||||||||
Protein Properties | Length: 172aa MW: 19818.9 Da PI: 8.2034 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.5 | 8.6e-26 | 50 | 100 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++++e +s+yF +pik+AA+eL v+lT+LK +CR +GI+RWP+Rk+ksl LPERR02G26470.1 50 EKTLTFELVSQYFCMPIKQAAQELTVGLTLLKSRCRALGIPRWPYRKVKSL 100 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.473 | 32 | 121 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.3E-21 | 52 | 100 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MQSSFLQNEL DALFDGDILS ILDGREKQEQ KLESQKAMEL QCPSGHGSGE KTLTFELVSQ 60 YFCMPIKQAA QELTVGLTLL KSRCRALGIP RWPYRKVKSL QALIRNVQEL ATETGQDEKM 120 TMNTVEMLQQ TKKLMEQSPD VELDHWTKSL RQACFKENYK RRRLLADCMK NS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 163 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G26470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627113.1 | 2e-82 | protein RKD1 | ||||
Refseq | XP_015627115.1 | 2e-82 | protein RKD1 | ||||
Swissprot | Q9FGD1 | 1e-35 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | A0A0D9VKZ2 | 1e-124 | A0A0D9VKZ2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G26470.1 | 1e-125 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 6e-38 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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